Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M23
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   4.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   6.2  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   6.2  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 326  SRHSSSVTMNLEPTRCTPSSGTGTMRSSTNSCHNTTH 436
            S HSSS++    P   T SS +G    ST S  +T H
Sbjct: 3686 SPHSSSISDTKSPATVTISSSSGQFTHSTFSTGSTMH 3722


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 385 WYRDNEEFYKFMPQYDPPNRAYKL 456
           ++ DN+ FY+  PQ  P N+A  L
Sbjct: 132 YFIDNQNFYRVSPQVLPKNKAIAL 155


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 349 YELGTDTLYSVKWYRDNEEFYKFMPQY 429
           Y L  ++L   +W +  +  +KFMP Y
Sbjct: 432 YNLNQESLEFQRWLKQRDISFKFMPNY 458


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 669 SPFLFSXWVTRYFRTFSREIYNFHS 595
           S +L   +  RYF  F  +IY+FHS
Sbjct: 135 SNYLVLQYKLRYFPVFDLKIYDFHS 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,561
Number of Sequences: 5004
Number of extensions: 56758
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)