Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M23
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 680 GTSSHLFCSPXGXPXILGPSLGRYITSILPSP 585
           G SS L C+      +LGP LGRY   I P P
Sbjct: 191 GGSSALACA-----IMLGPRLGRYDNGIDPLP 217


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 499 VTLHQVTLKSSGXYRCEVS 555
           + L  VTL+ +G YRC  S
Sbjct: 295 LALEAVTLEDNGIYRCSAS 313


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 499 VTLHQVTLKSSGXYRCEVS 555
           + L  VTL+ +G YRC  S
Sbjct: 295 LALEAVTLEDNGIYRCSAS 313


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 471 NXDTLQFVSSIR 436
           N DTLQF+S I+
Sbjct: 344 NNDTLQFISGIK 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,310
Number of Sequences: 438
Number of extensions: 4339
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)