Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M21
         (931 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0630 + 26260159-26260272,26260520-26260894                       31   0.99 
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.7  
12_02_0299 - 17051570-17052474,17053542-17053755                       30   2.3  
06_02_0127 + 12140843-12140966,12141170-12141567                       30   2.3  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    30   2.3  
07_01_0479 + 3606663-3607448                                           29   7.0  
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244...    29   7.0  
08_02_0839 + 21693348-21694853                                         28   9.2  

>03_05_0630 + 26260159-26260272,26260520-26260894
          Length = 162

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
 Frame = -3

Query: 917 GGGYXGKRPXXXPKGGKXXXXXXREXGXGXG---XQGRGXXGXFXGGKXPGNX*NSPXGX 747
           GGGY G R      GG       RE G G G     GRG  G   GG   G       G 
Sbjct: 100 GGGYGGGRGGGGYGGGGGGGYGRREGGYGGGGGYGGGRGGGGGGYGGSRGGGYGGDSGGN 159

Query: 746 W 744
           W
Sbjct: 160 W 160


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 787 PPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPPXXG 927
           PP   P  P P  P P P ++       PP     G  P  PPP  G
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGP-----PPPPPPKGPSPPPPPPPGG 372



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 787 PPXKXPXXPLPXX-PXPXPXSRXXLVRLFPPXGXXXGRXPSXPPPXXG 927
           PP K P  P P   P P P  +       PP G   G  P  PPP  G
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG-GPPPPPPKGG 385


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/56 (32%), Positives = 20/56 (35%)
 Frame = +1

Query: 751 PXGEF*XFPGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPP 918
           P   F   P  F P   P  P P  P P P  +   +  FPP        P  PPP
Sbjct: 273 PAFPFPHLPPIFSPPSPPPPPPPAFPFPFP--QLPPLPHFPPLPSFYPSPPPPPPP 326


>06_02_0127 + 12140843-12140966,12141170-12141567
          Length = 173

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = -3

Query: 917 GGGYXGKRPXXXPKGGKXXXXXXREXGXGXGXQGRGXXGXFXGGKXPG 774
           GGGY G        GG          G G G   +G  G + GG  PG
Sbjct: 113 GGGYGGYGGYGGYGGGGYGGYNKGYGGGGGGGYSKGFGGGYGGGGYPG 160


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = +1

Query: 727 PXSKGGQXPXGEF*XFPGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPS 906
           P +  G  P G     P   PP + P  P    P P P +   +    PP      + P 
Sbjct: 250 PPAAPGTLPNGS--GGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPP 307

Query: 907 XPPP 918
            PPP
Sbjct: 308 PPPP 311


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 21/58 (36%), Positives = 22/58 (37%)
 Frame = +1

Query: 745 QXPXGEF*XFPGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPP 918
           Q P G    FPG  PP   P  P    P P    +   VR   P G   G  P  PPP
Sbjct: 188 QRPPGVPPAFPGGPPP---PPGPFMRGPPPMGPPQ---VRPGMPGGPPPGMRPGMPPP 239


>06_03_0674 +
           23422004-23422552,23423295-23423369,23424360-23424443,
           23424749-23424991,23425348-23425515,23425608-23425727,
           23426372-23427016
          Length = 627

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = -3

Query: 926 PXXGGGYXGKRPXXXPKGGKXXXXXXREXGXGXGXQGRGXXGXFXGGKXPG 774
           P  GG   G R      GG          G G G  G G  G + GG   G
Sbjct: 513 PYYGGSSYGGRNRRSGGGGNRFAGRDFRQGSGGGYSGGGGGGGYSGGGGGG 563


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 787 PPXKXPXXPLPXXPXPXPXSRXXLVRLFPP 876
           PP      PLP  P P P  +  L++L PP
Sbjct: 16  PPTSPLQLPLPYLPPPPPPPQPPLLQLQPP 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,858
Number of Sequences: 37544
Number of extensions: 230423
Number of successful extensions: 511
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)