Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M21
         (931 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin pr...    30   5.2  
AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA...    30   5.2  
U34258-1|AAC46925.1| 1058|Drosophila melanogaster cappuccino pro...    29   6.9  
BT024458-1|ABC86520.1| 1153|Drosophila melanogaster AT18380p pro...    29   6.9  
BT021476-1|AAX33624.1| 1286|Drosophila melanogaster AT04667p pro...    29   6.9  

>X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin
           protein.
          Length = 147

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -3

Query: 917 GGGYXGKRPXXXPKGGKXXXXXXREXGXGXGXQGR-GXXGXFXGGK 783
           GGG  G R     +GG          G G G  GR G  G F GGK
Sbjct: 71  GGGGGGGRGAFGGRGGGGGRGGGGRGGGGRGGGGRGGGAGGFKGGK 116


>AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA
           protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -3

Query: 917 GGGYXGKRPXXXPKGGKXXXXXXREXGXGXGXQGR-GXXGXFXGGK 783
           GGG  G R     +GG          G G G  GR G  G F GGK
Sbjct: 64  GGGGGGGRGAFGGRGGGGGRGGGGRGGGGRGGGGRGGGAGGFKGGK 109


>U34258-1|AAC46925.1| 1058|Drosophila melanogaster cappuccino
           protein.
          Length = 1058

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +1

Query: 775 PGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPP 918
           P   P    P  P P  P P P +        PP     G  P  PPP
Sbjct: 491 PPPLPAFVAPPPPPPPPPPPPPLANYGAPPPPPPPPPGSGSAPPPPPP 538


>BT024458-1|ABC86520.1| 1153|Drosophila melanogaster AT18380p
           protein.
          Length = 1153

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +1

Query: 775 PGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPP 918
           P   P    P  P P  P P P +        PP     G  P  PPP
Sbjct: 586 PPPLPAFVAPPPPPPPPPPPPPMANYGAPPPPPPPPPGSGSAPPPPPP 633


>BT021476-1|AAX33624.1| 1286|Drosophila melanogaster AT04667p
           protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +1

Query: 775 PGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPP 918
           P   P    P  P P  P P P +        PP     G  P  PPP
Sbjct: 719 PPPLPAFVAPPPPPPPPPPPPPMANYGAPPPPPPPPPGSGSAPPPPPP 766


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,468,398
Number of Sequences: 53049
Number of extensions: 346396
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4587341472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)