Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M21
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.29 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.29 
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +1

Query: 715 KFRPPXSKGGQXPXGEF*XFPGXFPPXKXPXXPL--PXXPXPXPXSRXXLVRLFPPXGXX 888
           +F PP   G   P      +PG  PP   P  P   P    P P SR       PP G  
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA----PPSG-- 377

Query: 889 XGRXPSXPPP 918
            G  P  PPP
Sbjct: 378 HGMIPPPPPP 387



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +1

Query: 772 FPGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPPXXG 927
           + G +PP   P   +   P P P +     R  PP     G  P  PPP  G
Sbjct: 256 YQGQYPPVPPPPPSVTPMPPPMPPTPGMTPR--PPPPPSSGMWPPPPPPPPG 305


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +1

Query: 715 KFRPPXSKGGQXPXGEF*XFPGXFPPXKXPXXPL--PXXPXPXPXSRXXLVRLFPPXGXX 888
           +F PP   G   P      +PG  PP   P  P   P    P P SR       PP G  
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA----PPSG-- 387

Query: 889 XGRXPSXPPP 918
            G  P  PPP
Sbjct: 388 HGMIPPPPPP 397



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +1

Query: 772 FPGXFPPXKXPXXPLPXXPXPXPXSRXXLVRLFPPXGXXXGRXPSXPPPXXG 927
           + G +PP   P   +   P P P +     R  PP     G  P  PPP  G
Sbjct: 266 YQGQYPPVPPPPPSVTPMPPPMPPTPGMTPR--PPPPPSSGMWPPPPPPPPG 315


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 722 APQXQKGAXPPXGNFXNSXAXSPLEXPPXXPSPXXXPXXRFPGXXXSA 865
           AP   +   PP  +F  S + SP   PP  P     P   +PG   +A
Sbjct: 281 APTSSRAPLPPSSSFAPSISASPAPAPPPPPPQAASP---YPGMKSTA 325


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 722 APQXQKGAXPPXGNFXNSXAXSPLEXPPXXPSPXXXPXXRFPGXXXSA 865
           AP   +   PP  +F  S + SP   PP  P     P   +PG   +A
Sbjct: 283 APTSSRAPLPPSSSFAPSISASPAPAPPPPPPQAASP---YPGMKSTA 327


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = -3

Query: 917 GGGYXGKRPXXXPKGGKXXXXXXREXGXGXGXQGRGXXGXFXGGKXPGN 771
           GG + G        GG          G G G  GRG  G   GG   GN
Sbjct: 112 GGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGN 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,899,830
Number of Sequences: 27780
Number of extensions: 165175
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)