Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M19
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    91   2e-19
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    28   1.9  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   5.9  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   7.8  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 7/215 (3%)
 Frame = +3

Query: 192 EQKAKETLKNANVTKVLLAALDEVQLQSLPLGA--GILIYHLATKIKPQTMSKLN----F 353
           E   K+TLKN  ++  L   ++E  + S       G L++ LA     Q   K N    F
Sbjct: 19  ETTVKDTLKNKKLSSSLNKVIEETNVGSSGCDRTIGNLLFTLANASLKQKDPKSNAHEAF 78

Query: 354 ICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIVTPEQVEQAVEKHM 533
           I   I SG L + L+V+AA+ Y     ++  ++  EF+K  GVGV++TPEQ+EQ V  ++
Sbjct: 79  IASKIVSGDLKTNLQVNAAITYCK---DKDTIDESEFDKETGVGVVLTPEQIEQLVGDYV 135

Query: 534 VKYKQELLEKRYR-FNSGIIMQAVRADLTWADGKAIKSEVDVQIFDLXGPKTEADLXPVP 710
            + K ++LE+RY+  N         A L WA    +K  +D +  +L GPKTE D     
Sbjct: 136 AENKSKILEQRYQLLNPSASALRQHALLKWAPQLEVKQTLDRKFLELLGPKTEQDAAAGK 195

Query: 711 KAXKXQRLXIHQKIKXGXTKVXNKQMLIXENXEEH 815
           K     +    + +  G  K   +Q ++ E  +++
Sbjct: 196 KKGAKAKNSKQKTVDSGKAK---EQKIVSEQSKKY 227


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 712 LGTGXRSASVLGPXKSKICTSTSLFIALPSAQVRS-ALTACMIIPELNLYLFSNSSCL 542
           +G       VLGP    + T    F+   SA   + +L    ++P+L+L    NS CL
Sbjct: 282 VGWERNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVPQLDLDRIQNSKCL 339


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 450 NIEEFEKACGVGVIVTPEQVEQAVEKHMVKYKQELL 557
           NI+    AC    +  P  V  +V K+ +++KQ L+
Sbjct: 54  NIDSKYVACNSRSVTPPNDVASSVSKNTLRHKQRLM 89


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 537 KYKQELLEKRYRFNSGIIM--QAVRADLTWADGKAIKSEVDVQIFDLXGPKTEADL 698
           K  +E++ K    N+ II+   A   DL  +DG  +  EVD +     G  T+ DL
Sbjct: 171 KQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,604
Number of Sequences: 5004
Number of extensions: 50891
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)