Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M17
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0189 - 6253659-6255380                                           29   3.6  
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331...    29   3.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.4  
06_01_0667 + 4878784-4878900,4879016-4879118,4879256-4879341,487...    28   8.4  
04_04_1463 + 33787799-33787973,33788669-33789096                       28   8.4  
02_02_0228 - 8074734-8074737,8075533-8076569                           28   8.4  

>03_02_0189 - 6253659-6255380
          Length = 573

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 618 IPGVSPWKLPRALSCXRPLXAYGIPVRLSPFGKRGASHSSRCRYL 752
           + G +  +   AL   +PL   G P R+S     G  H+  CR+L
Sbjct: 246 VGGANRSRQEEALKKNKPLIVVGTPGRISEISAGGKLHTHGCRFL 290


>02_05_0064 -
           25529630-25531440,25531663-25531673,25533113-25533198,
           25533412-25534259,25535385-25535736
          Length = 1035

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 618 IPGVSPWKLPRALSCXRPLXAYGIPVRLSPFGKRGASHSSRCRYL 752
           + G +  +   AL   +P+   G P R+S     G  H+  CR+L
Sbjct: 708 VGGANRSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSCRFL 752


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 355 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 510
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 304 NESAN---ARGEAVCVLGALPLPRSLTRCAR 387
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_01_0667 +
           4878784-4878900,4879016-4879118,4879256-4879341,
           4879434-4879496,4879589-4879831,4880639-4880728,
           4881403-4881600
          Length = 299

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
 Frame = -2

Query: 717 ASRREKGGQVSRKRXGVGNRRAHEGASRGKRLVSFIVLSGFATSD--LSVDFCDARQGGG 544
           A+        +  R GV  R +         L S + +SGF       S D   A  GGG
Sbjct: 161 AANARSPAAAATSRKGVNKRCSPAAMDMDSGLSSLLGISGFCFEAPWTSQDASTAAGGGG 220

Query: 543 AYGKTPATRPFYGSWPFAGLLLTCSF 466
             GK    RP   S   AGL L  SF
Sbjct: 221 --GKRRKQRPPPASHNVAGLNLAASF 244


>04_04_1463 + 33787799-33787973,33788669-33789096
          Length = 200

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 848 GLKXIVPDKAQRSG*-TGVRAPSQVGGXDLHRTE 750
           G++    + A RSG   G RAP   GG D+HR +
Sbjct: 130 GVRRATAEWAMRSGRRVGARAPGDDGGGDVHRRD 163


>02_02_0228 - 8074734-8074737,8075533-8076569
          Length = 346

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 752 EIPTA*AMRSATLPEGRKADRYPVSGQGSXTGERTRELPG--GNAWYLL 612
           E+P   ++R+A +P G +    PV GQ   TG   R   G   N++Y L
Sbjct: 178 ELPGGVSLRNAEVPRGFRDSTTPVYGQLLATGRLYRRAAGFLANSFYEL 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,855,891
Number of Sequences: 37544
Number of extensions: 505212
Number of successful extensions: 1451
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)