Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M14
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   100   2e-22
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.86 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.5  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   4.6  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   8.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.1  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  100 bits (240), Expect = 2e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
 Frame = +3

Query: 273 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 449
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 450 STNQADGHNSDTYLVPRAIYKDPFRRGNHILV 545
           ST QA G+NSDT L P A+Y DPFRRG++ILV
Sbjct: 67  STGQAPGNNSDTLLKPVAMYNDPFRRGDNILV 98



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
 Frame = +1

Query: 433 GTSMAAQPTKLMGTILIPTS-YLVLFTRIHSVEEITSSFMCDTYKYNMEPTESNNRISCQ 609
           G+S    P     T+L P + Y   F R  ++  + + +  D       P   N+R +C 
Sbjct: 65  GSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADG-----SPNGFNHRDACA 119

Query: 610 EAYDKCKDDEPWFGIEQEYILLGFRSAPLRVAPGVVPPTARAILLRCRCXKVFARDXXEA 789
           +  +K  D E WFGIEQEY +L +   P     G  P             +VFARD  EA
Sbjct: 120 KLLEKHADKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEA 179

Query: 790 HYRCXLYA 813
           HY+  LYA
Sbjct: 180 HYKACLYA 187


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 395 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 291
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 207 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 323
           H KIE+N + +S P ++ S    L    L  +  + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 216 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 395
           ++DN  + S     +S N+ LS +    +  +P+PA  +  T +  D +    R    T 
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351

Query: 396 NFIPKAPKD 422
           +FI  + K+
Sbjct: 352 SFIANSEKE 360


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 SSTNQADGHNSDTYLVPRAI 506
           + T   +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 590 LLSVGSMLYLYVSHINE-DVISSTEWILVNSTRYEVG 483
           LLS+   + L  + + E D  SST WI +N+   EVG
Sbjct: 205 LLSLEESIKLLSARLEETDTPSSTHWIEINAGFKEVG 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,445
Number of Sequences: 5004
Number of extensions: 70556
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)