Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_M13
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 33 0.38
12_02_0082 - 13372997-13373863,13373928-13374386 30 2.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 2.7
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 29 4.7
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 29 4.7
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 29 6.2
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.2
01_01_1008 - 7987936-7988628,7988923-7989102 28 8.2
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 513 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL--PLTGYLSA 686
CWR + T D Q + +KD P + PSC L+F PL PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 687 F 689
F
Sbjct: 343 F 343
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 636 SCALLFRPLPLTGYLSAFLPS 698
SCALLF P+PL G LPS
Sbjct: 164 SCALLFSPMPLDGPTLGLLPS 184
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 730 QREL*ESATLPXGRKAD-RYPVSGRGRNRRAHEGASRGKRLVS 605
QREL AT P D R ++GR + RR + A+R +R VS
Sbjct: 32 QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 516 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL--PLTGYLSAF 689
WR + T D Q + +KD P + PSC L+F PL PL L AF
Sbjct: 622 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAF 681
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 516 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL--PLTGYLSAF 689
WR + T D Q + +KD P + PSC L+F PL PL L AF
Sbjct: 496 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAF 555
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 637 RALSCSDPCRLPDTCPPFSXREAWRFLIAHA 729
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 345 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 500
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 716 RKRHASRXEKGGQVSGKRQGSEQESARGSFQGETPG 609
R R R GG+V+G+ + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,598,794
Number of Sequences: 37544
Number of extensions: 507902
Number of successful extensions: 1592
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -