Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M13
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    31   1.4  
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    28   7.3  

>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 586 KPDRTIKIPGVSPWKLPRALSCSDPCRLPDTCPPFSXREAWRFLIAHAVGI 738
           K   +I +PGV   ++    S  DPC LPD     +  E  R + A   G+
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKKRALNEKERKVYAPFSGL 270


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 766 LXRTTYTELRYLQREL*ESATLPXGRKADRYPVSGRGRNRRAHEGAS 626
           L   T  +L  +QRE  E   +P G+KA R P S    + +++EG S
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,194
Number of Sequences: 27780
Number of extensions: 374975
Number of successful extensions: 962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)