Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M10
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    31   0.30 
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    30   0.39 
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.4  

>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 341 LIIKLFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFEST 514
           L+I  +  I  + +  + PK+I  K++K +K +   E L +  K   FD+   + E T
Sbjct: 597 LLIMSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 583 RTKGFFDSSLSLVRLLRGYRNGESTFKISSKSVEVMIFS 467
           +T+G F S + L  LL+ Y NG  T+K S K+V V++ S
Sbjct: 678 QTEGTFTSKVILTDLLKCYSNG--TYKASFKNVHVVLRS 714


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 505 KISSKSVEVMIF---SKLSKLLSG*VNFIYFNYFCKYIFRINSSNFFRTNG 362
           KI+SK   V +    ++ S LLSG  + + F  F KYI  +N   +    G
Sbjct: 54  KINSKGFTVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGG 104


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 401 NIFTKVVKINKINSPREQLAEFRKDHY---FDRFRGDFE 508
           N F K   + +I S    ++EF+K  Y   FD F+  F+
Sbjct: 163 NFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,105
Number of Sequences: 5004
Number of extensions: 58931
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)