Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M10
         (902 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF076776-1|AAF82185.1| 3201|Drosophila melanogaster helicase DOM...    32   0.94 
AE013599-3189|AAM70871.1| 3198|Drosophila melanogaster CG9696-PA...    32   0.94 
AE013599-3188|AAM70870.1| 3183|Drosophila melanogaster CG9696-PD...    32   0.94 
BT010066-1|AAQ22535.1|  962|Drosophila melanogaster LD13959p pro...    31   1.6  
AJ277592-1|CAB89187.1|  962|Drosophila melanogaster Su(UR)ES pro...    31   1.6  
AE014296-1885|AAF50110.3|  962|Drosophila melanogaster CG7869-PA...    31   1.6  

>AF076776-1|AAF82185.1| 3201|Drosophila melanogaster helicase DOMINO A
            protein.
          Length = 3201

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 443  PREQLAEFRKDHYFDRFRGDFESTFSVP-VSPQKPNQAETTVEKPLSSW 586
            P  QLA  R++    RFRG F+    +P + PQ P +  T  E  ++ W
Sbjct: 2097 PTPQLARLRRELKSQRFRGSFKPNMPIPGLKPQLPTKPLTEPE-AMAEW 2144


>AE013599-3189|AAM70871.1| 3198|Drosophila melanogaster CG9696-PA,
            isoform A protein.
          Length = 3198

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 443  PREQLAEFRKDHYFDRFRGDFESTFSVP-VSPQKPNQAETTVEKPLSSW 586
            P  QLA  R++    RFRG F+    +P + PQ P +  T  E  ++ W
Sbjct: 2097 PTPQLARLRRELKSQRFRGSFKPNMPIPGLKPQLPTKPLTEPE-AMAEW 2144


>AE013599-3188|AAM70870.1| 3183|Drosophila melanogaster CG9696-PD,
            isoform D protein.
          Length = 3183

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 443  PREQLAEFRKDHYFDRFRGDFESTFSVP-VSPQKPNQAETTVEKPLSSW 586
            P  QLA  R++    RFRG F+    +P + PQ P +  T  E  ++ W
Sbjct: 2097 PTPQLARLRRELKSQRFRGSFKPNMPIPGLKPQLPTKPLTEPE-AMAEW 2144


>BT010066-1|AAQ22535.1|  962|Drosophila melanogaster LD13959p
           protein.
          Length = 962

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 395 PKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFESTFSVPVSPQK 541
           PK +F+K + + +    R  L+E+ KD    RFR  F+ +  + V+P++
Sbjct: 211 PKEVFSKRIDLEEYYKQRGFLSEYIKDFRLRRFRHQFDKSLPL-VAPEQ 258


>AJ277592-1|CAB89187.1|  962|Drosophila melanogaster Su(UR)ES
           protein protein.
          Length = 962

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 395 PKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFESTFSVPVSPQK 541
           PK +F+K + + +    R  L+E+ KD    RFR  F+ +  + V+P++
Sbjct: 211 PKEVFSKRIDLEEYYKQRGFLSEYIKDFRLRRFRHQFDKSLPL-VAPEQ 258


>AE014296-1885|AAF50110.3|  962|Drosophila melanogaster CG7869-PA
           protein.
          Length = 962

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 395 PKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFESTFSVPVSPQK 541
           PK +F+K + + +    R  L+E+ KD    RFR  F+ +  + V+P++
Sbjct: 211 PKEVFSKRIDLEEYYKQRGFLSEYIKDFRLRRFRHQFDKSLPL-VAPEQ 258


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,053,282
Number of Sequences: 53049
Number of extensions: 585282
Number of successful extensions: 1650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4403028645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)