Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M09
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    27   2.7  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   8.1  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 544 EDFS-CKILLTQLKCDFLKSQNLSNKSGSLVLFDNVKDYTKRKT 416
           ++FS C I+ + L  DF      S +  +LV+  N K+Y +  T
Sbjct: 72  KEFSECDIVFSGLDADFAGEIEKSFRDANLVIVSNAKNYRREPT 115


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  CFPVLNYGNYSQKANICHSSAILNSL 164
           CF   NYG  S ++N CH  A+ + L
Sbjct: 242 CFS--NYGGSSLRSNFCHEQAVRHLL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,879
Number of Sequences: 5004
Number of extensions: 65232
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)