Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M08
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    31   0.31 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    30   0.53 
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   5.0  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 186  TIMTNTNEVTXQELEATDVVSIDLVPETEGNYTQTLRVLC 305
            T +TN+NE    ++E    +SID     E N+T T R  C
Sbjct: 1716 TSLTNSNENVGVDVELVSAISIDNETFIERNFTDTERKYC 1755


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 286 KHCEYYVSSRRHGTXVTRRYNDXVXLDXVLFAXYPYR 396
           +H  Y +S   +   V RRY+D   L   L   YP+R
Sbjct: 302 RHNNYIISDSSNTREVLRRYSDFFWLHSYLMKKYPFR 338


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 171 SXKTPTIMTNTNEVTXQELEATDVVSIDLVPETEGN 278
           S  +PT++T+ + V  Q+LEA+    I  V E E +
Sbjct: 85  SITSPTLLTSVDPVLYQQLEASSTNDISTVFEDESS 120


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 47  F*CCSXLWKCLGAESLEGCDSVQRSLLIANCINL 148
           F C   + KC+  E   G +SVQ  L++  C NL
Sbjct: 91  FYCSRKIIKCICNEEHVGIESVQLKLILLLCQNL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,054
Number of Sequences: 5004
Number of extensions: 30189
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)