Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M08
         (931 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021565-1|AAH21565.1|  465|Homo sapiens sorting nexin 8 protein.      53   1e-06
BC007785-1|AAH07785.2|  459|Homo sapiens SNX8 protein protein.         53   1e-06
AF121858-1|AAD27831.1|  465|Homo sapiens sorting nexin 8 protein.      53   1e-06

>BC021565-1|AAH21565.1|  465|Homo sapiens sorting nexin 8 protein.
          Length = 465

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 256 LYPRRKGIILKHCEYYVSSRRHGTXVTRRYNDXVXLDXVLFAXYPYR 396
           L P +KG+ LKH EY VSS+R  + V RRYND V    +L   +PYR
Sbjct: 81  LIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEMLLHKFPYR 127


>BC007785-1|AAH07785.2|  459|Homo sapiens SNX8 protein protein.
          Length = 459

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 256 LYPRRKGIILKHCEYYVSSRRHGTXVTRRYNDXVXLDXVLFAXYPYR 396
           L P +KG+ LKH EY VSS+R  + V RRYND V    +L   +PYR
Sbjct: 75  LIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEMLLHKFPYR 121


>AF121858-1|AAD27831.1|  465|Homo sapiens sorting nexin 8 protein.
          Length = 465

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 256 LYPRRKGIILKHCEYYVSSRRHGTXVTRRYNDXVXLDXVLFAXYPYR 396
           L P +KG+ LKH EY VSS+R  + V RRYND V    +L   +PYR
Sbjct: 81  LIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEMLLHKFPYR 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,862,759
Number of Sequences: 237096
Number of extensions: 1319295
Number of successful extensions: 1398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12158972418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)