Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_M06
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1201 - 11419851-11419913,11420090-11420311 31 1.7
05_01_0027 + 178942-179055,179140-179253 30 2.9
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 3.8
06_01_1042 + 8187536-8187616,8187713-8188315 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.9
10_01_0334 - 3680612-3681266,3682253-3682374 28 8.9
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 28 8.9
04_03_0380 - 15150814-15152304 28 8.9
04_03_0348 + 14735581-14737071 28 8.9
01_01_1008 - 7987936-7988628,7988923-7989102 28 8.9
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 30.7 bits (66), Expect = 1.7
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 526 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCFRPC--RLPDTCPPFSLR 693
L PP Q+WR+ PTG + +FP G LP A +P R P T P F R
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPAT-PLFPSR 71
Query: 694 EAWRFLIAHAVGISVRCRSFAP 759
A + + + + +F P
Sbjct: 72 VAEGLFGLNGIEVGIEGDNFTP 93
>05_01_0027 + 178942-179055,179140-179253
Length = 75
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 541 EHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSCFRPCRL-PDTCPPFSL 690
E H+ R +RWR R FPP K SC RPC L P T P F+L
Sbjct: 7 EGHR-RAGCRRWREGMAEAR---FPP-KAYLCDSCLRPCTLHPTTIPAFAL 52
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 535 PDEHHKNRR---SSQRWRNPTGL*RYQAFPPGKLPRALSCFRPCRLPD 669
P +H N SS+ + +P G+ + FP LP A S ++P LP+
Sbjct: 10 PGKHRLNDTLLTSSRNYVSPQGILEFYNFPIPSLPSASSNYQPSSLPE 57
>06_01_1042 + 8187536-8187616,8187713-8188315
Length = 227
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 740 RTEIPTA*AMRKRHASRREKGGQVSGKRQGRKQESARGSFPGGNAWY 600
RTE A + R A E+G + G R+ R++ RGS G +W+
Sbjct: 63 RTERERA-PLAARPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWW 108
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 286 NESAN---ARGEAVCVLGALPLPRSLTRCAR 369
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 701 HASRREKGGQVSGKRQGRKQESARGSFP 618
H R + GQ R GRK S+R SFP
Sbjct: 185 HGRSRRRRGQSRRARGGRKSSSSRRSFP 212
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = -3
Query: 773 HTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSG--KRQGRKQESARGSFPGGNAW 603
H + A +H T + + R + SG KR+G K S R P G W
Sbjct: 713 HDGEKTATSVHSTPALSPMGSPRHSVGRDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGW 771
>04_03_0380 - 15150814-15152304
Length = 496
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 704 RHASRREKGGQVSGKRQGRKQESARGSFPGGNA 606
R A EKG ++ + G K+ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472
>04_03_0348 + 14735581-14737071
Length = 496
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 704 RHASRREKGGQVSGKRQGRKQESARGSFPGGNA 606
R A EKG ++ + G K+ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 710 RKRHASRREKGGQVSGKRQGRKQESARGSFPG 615
R R RR GG+V+G+ R + RG++ G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEG 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,158,507
Number of Sequences: 37544
Number of extensions: 553308
Number of successful extensions: 1853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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