Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M06
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.23 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.54 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 574 WRNPTGL*RYQAFPPGKLPRALSCFRPCRLPDTCPPF 684
           + NP    RYQ  P GK+ R L      RL D  P F
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSF 127


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 462 SHVLSCVIPLILWITVLPPLSELIPLAA 379
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 483 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 385
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 566 VRGGETRQDYKDTRRFPLESSLVRSPVSD 652
           V   ET  ++ DT R P+  SL +SP +D
Sbjct: 171 VEENETYDEF-DTIRIPIVRSLSKSPPND 198


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 763 WAVCTNPPFSPD 798
           W V  +PP+SPD
Sbjct: 264 WDVLPHPPYSPD 275


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 462 SHVLSCVIPLILWITVLPPLSELIPL 385
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,379
Number of Sequences: 438
Number of extensions: 5961
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)