Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M05
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 798 KNXPGLPPXXXPPXGPPXPPP 860
           +  P  P    PP GPP  PP
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +3

Query: 717 PPPPPXXXPPEXXPSXXPRGAXXXXXXKNXPGLPPXXXPPXGP 845
           P P P    P   P    RG+         PG PP   P   P
Sbjct: 21  PGPQPS---PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 817 GSPGXFXGXXGGGAPLGXXEGXXSGGXXXGGGGG 716
           G PG       GG   G   G    G   GGGGG
Sbjct: 20  GGPG---SSSAGGVVTGASGGSIVVGANNGGGGG 50


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 831 PPXGPPXPPPP 863
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.144    0.493 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,243
Number of Sequences: 438
Number of extensions: 4213
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)