Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_M04
(986 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.047
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.082
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.19
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.44
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 9.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.047
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 552 PPXXPPPPPXGGGXXVXXGXPPPXPP 629
PP PPPPP G PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 554 PXXXPPPPPRGGGXXXXXXXXPPPXPPP 637
P PPPPP G PPP PPP
Sbjct: 5 PPGNPPPPPPPPG--FEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.082
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -2
Query: 730 GGXXXXPPPRGGGGXXXPPGXXXXXXGGXXXWXXGGXGGGXPXXTXXPPPXGGGGGXXGG 551
GG PP GG G G GG GG GGG P GGG G GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGH-----GGFGGGPGGFEGGPGGFGGGPGGFGG 249
Score = 31.9 bits (69), Expect = 0.14
Identities = 26/88 (29%), Positives = 26/88 (29%)
Frame = -1
Query: 950 GXXXGXXGXXXXXGGGXPPXXGGXXXXXXXXGGGGXXXXXXXXXPXGGAXGXXXGXXGXX 771
G G G GG PP GG G GG GG G G G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFG---GFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240
Query: 770 XXXXGGXGPPXXXGGXXXXXPPXGGGGG 687
GG G GG GGG G
Sbjct: 241 GGGPGGFG--GGLGGFGGGPGGFGGGPG 266
Score = 31.5 bits (68), Expect = 0.19
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = -2
Query: 700 GGGGXXXPPGXXXXXXGGXXXWXXGGXGGGXPXXTXXPPPXGGGGGXXGG 551
G GG PG GG GG GGG P GGG G GG
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGG-GPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 29.5 bits (63), Expect = 0.76
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +3
Query: 525 GGGGGGXXXPPXXPPPPPXG-GGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPP 701
GGG GG PPP P G GG G P PGG P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 702 RGGG 713
GGG
Sbjct: 247 FGGG 250
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 577 GGGGGXXGGXXXPPPPP 527
GG GG GG PPP P
Sbjct: 188 GGFGGFGGGSGGPPPGP 204
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.14
Identities = 34/156 (21%), Positives = 35/156 (22%), Gaps = 3/156 (1%)
Frame = +1
Query: 514 PPGGGGGGXXXXXPXXXPPPPPXGGGXXXXXXXXPPXXPXXXXXXPXGXXXXXXGGXXPP 693
PP G P PPP PP P PP
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP---------PLSSSRAVSNPPAPP 392
Query: 694 PPPXGGXXXXXPPXXXGGPXPPXXXXXXPXXPXXXPXA-PPXGXXXXXXXXXPPPPXXXK 870
P G PP P P P + PP PP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 871 XXXXPPXXGGXP--PPXXXXXPXXPXXXPXXGPXXP 972
PP G P PP P P P P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAP-APPPAPAPAPAAP 487
Score = 29.5 bits (63), Expect = 0.76
Identities = 25/119 (21%), Positives = 26/119 (21%)
Frame = +1
Query: 616 PPXXPXXXXXXPXGXXXXXXGGXXPPPPPXGGXXXXXPPXXXGGPXPPXXXXXXPXXPXX 795
PP P G PPPPP P G PP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 796 XPXAPPXGXXXXXXXXXPPPPXXXKXXXXPPXXGGXPPPXXXXXPXXPXXXPXXGPXXP 972
P P PPP + P G P P P P P
Sbjct: 375 QP-PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Score = 29.1 bits (62), Expect = 1.0
Identities = 26/109 (23%), Positives = 30/109 (27%), Gaps = 2/109 (1%)
Frame = +3
Query: 537 GGXXXPPXXPPPP--PXGGGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPPRGG 710
G PP PP P P + PP PP PPPP
Sbjct: 262 GTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK--RPPPPPPPSR 319
Query: 711 GXXXXPPXXXGGAXAPXXXXXXPXXAXXXPXGPXXXXGXSXXXXXPPPP 857
PP G + + P + P G S PPPP
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS--APPPPPP 366
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/114 (21%), Positives = 25/114 (21%), Gaps = 6/114 (5%)
Frame = +1
Query: 616 PPXXPXXXXXXPXGXXXXXXGGXXPPPPPXGGXXXXXPPXXXGGPXPPXXXXXXPXXPXX 795
PP P P PP PP PP P P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 796 XPXAPP------XGXXXXXXXXXPPPPXXXKXXXXPPXXGGXPPPXXXXXPXXP 939
P PP PPPP + PP G P P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 586 PPXGGGGGXXGGXXXPPPPPPPR 518
PP G G PPPPPPPR
Sbjct: 325 PPIGNGSSNSS---LPPPPPPPR 344
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +3
Query: 564 PPPPPXGGGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPPRGGGXXXXPP 731
PPPPP PPP PP PG PP G P
Sbjct: 361 PPPPPPRSAPSTGR-QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 848 PPPPPXXKXXPXPPXGGGXPPPXXXXPXXP 937
PPPPP + PP G G P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +3
Query: 615 PPXPPXXXXXXPPXXXXXXPGGXXXPPPPRGGGXXXXPPXXXGGAXAP 758
PP PP PP P PP G PP AP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Frame = -2
Query: 619 GGGXPXXTXXPPPXGGGGGXXGGXXXPP------PPPPPR 518
G G + PPP G PP PPPPPR
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Frame = -3
Query: 630 GXGGGXXXXXXXXPPPRGGGGG--XXXGXXXXXPPPPPP 520
G G PPPR G PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.19
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +3
Query: 564 PPPPPXGGGXXVXXGXPPPXPPXXXXXXPPXXXXXXPG--GXXXPPPP 701
PPPPP P P PP P PG G PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 31.5 bits (68), Expect = 0.19
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 589 PPPXGGGGGXXGGXXXPPPPPPP 521
PPP G G PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.76
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 552 PPXXPPPPPXGGGXXVXXGXPPPXPP 629
PP PPPP G G PPP PP
Sbjct: 761 PPPPPPPPGVAGA-----GPPPPPPP 781
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 564 PPPPPXGGGXXVXXGXPPPXPP 629
PPPPP G PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/83 (28%), Positives = 24/83 (28%)
Frame = +1
Query: 565 PPPPPXGGGXXXXXXXXPPXXPXXXXXXPXGXXXXXXGGXXPPPPPXGGXXXXXPPXXXG 744
PPPPP P P P GG PPPPP G PP
Sbjct: 732 PPPPPPA-------VIVPTPAPAPIPVPPPAPIM---GGPPPPPPPPGVAGAGPPPPP-- 779
Query: 745 GPXPPXXXXXXPXXPXXXPXAPP 813
P PP P A P
Sbjct: 780 -PPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 607 PXXTXXPPPXGGGGGXXGGXXXPPPPPP 524
P PPP G G PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 566 PPPPPRGGGXXXXXXXXPPPXPP 634
PPPPP G PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 314 APPGGGGXXXPPXXXPXXXGXPPPPP 391
AP GG PP G PPPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Frame = +2
Query: 848 PPPPPXXKXXPXPP-----XGGGXPPPXXXXPXXPXXXPXXXAP 964
PPP P P PP G G PPP P AP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 552 PPXXPPPPPXGGGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPPRGGGXXXXPP 731
P P P P + G PPP PP P P PP GG P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP------PGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +3
Query: 531 GGGGXXXPPXXPPPPPXGGGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPP 701
GG P PP P P P PP PP G PPPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPP-QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Frame = +3
Query: 528 GGGGGXXXPPXXPPPPPXGGGXXVXXGXPP--PXPPXXXXXXPPXXXXXXPGGXXXPPPP 701
G PP P PP PP PP PP P PPP
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
Query: 702 RGGGXXXXPP 731
+ PP
Sbjct: 176 QPAAPVKSPP 185
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 571 GGGXXGGXXXPPPPPPP 521
G GG PPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/75 (26%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Frame = +2
Query: 749 PRPXXXXPXXPXXXXXXPXPXXX--GGXVXXXXXXPP-PPPXXKXXPXPPXGGGXPPPXX 919
P+P P P P P V PP P P P P G PP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 920 XXPXXPXXXPXXXAP 964
P P AP
Sbjct: 1184 PAAGVPPVPPPSEAP 1198
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/83 (24%), Positives = 20/83 (24%)
Frame = +1
Query: 691 PPPPXGGXXXXXPPXXXGGPXPPXXXXXXPXXPXXXPXAPPXGXXXXXXXXXPPPPXXXK 870
PP P P G P P P P PP P PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP--VPKPAAGVPPVPPPSEA 1197
Query: 871 XXXXPPXXGGXPPPXXXXXPXXP 939
P G P P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.1 bits (57), Expect = 4.1
Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Frame = +2
Query: 749 PRPXXXXPXXPXXXXXXPXPXXXGGXVXXXXXXPPPPPXXKXXPXPPXGGGXPP-PXXXX 925
P+P P P P P G P PPP P P G PP P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGV------PPVPPPS-TAPPVPTPSAGLPPVPVPTA 1234
Query: 926 PXXPXXXPXXXAP 964
P P AP
Sbjct: 1235 KAPPVPAPSSEAP 1247
Score = 26.6 bits (56), Expect = 5.4
Identities = 22/97 (22%), Positives = 22/97 (22%), Gaps = 2/97 (2%)
Frame = +1
Query: 688 PPPPPXGGXXXXXPPXXXGGPXPPXXXXXXPXXPXXXPXAPPXGXXXXXXXXXPPPPXXX 867
PP P PP P P P P P G PP
Sbjct: 1050 PPVPKSSSGAPSAPPPV---PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK 1106
Query: 868 KXXXXPPXX--GGXPPPXXXXXPXXPXXXPXXGPXXP 972
PP G PP P P P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 26.6 bits (56), Expect = 5.4
Identities = 21/76 (27%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Frame = +2
Query: 749 PRPXXXXPXXPXXXXXXPX-PXXXGGX--VXXXXXXPP-PPPXXKXXPXPPXGGGXPPPX 916
P+P P P P P G V PP P P P PP P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 917 XXXPXXPXXXPXXXAP 964
P P AP
Sbjct: 1222 PSAGLPPVPVPTAKAP 1237
Score = 26.2 bits (55), Expect = 7.1
Identities = 24/102 (23%), Positives = 25/102 (24%), Gaps = 1/102 (0%)
Frame = +3
Query: 552 PPXXPPPPPXGGGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPPRGGGXXXXPP 731
PP PPP P PP P P PP P+ PP
Sbjct: 966 PPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS--KAPP 1023
Query: 732 XXXGGAXAPXXXXXXPXXAXXXPXG-PXXXXGXSXXXXXPPP 854
A AP P P S PPP
Sbjct: 1024 VPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -2
Query: 706 PRGGGGXXXPPGXXXXXXGGXXXWXXGGXGGGXPXXTXXPPPXGGGGGXXGG 551
P G GG G GG GG GGG G GG GG
Sbjct: 134 PAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = -2
Query: 607 PXXTXXPPPXGGGGGXXGGXXXPPPPPPP 521
P + PP PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.4
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = -2
Query: 712 PPPRGG-GGXXXPPGXXXXXXGGXXXWXXGGXGGGXPXXTXXPPPXGGGGGXXGG 551
P RGG GG G GG G GGG GG G GG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 9.4
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +3
Query: 552 PPXXPPPPPXG--GGXXVXXGXPPPXPPXXXXXXPPXXXXXXPGGXXXPPPPRGGGXXXX 725
PP P PP G G + PP PP PP PG P P G
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPP--GMALPPGMPAPFPGYPAVPAMP-GIPGATA 556
Query: 726 PPXXXG 743
PP G
Sbjct: 557 PPGAPG 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.155 0.549
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,267
Number of Sequences: 5004
Number of extensions: 41060
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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