Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M04
         (986 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.23 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect(2) = 0.23
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 538  PPPPPPR 518
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865



 Score = 22.2 bits (45), Expect(2) = 0.23
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 553  GXXXPPPPPP 524
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 541  PPPPPPP 521
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 541  PPPPPPP 521
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 555  PXXPPPPPXGG 587
            P  PPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 552  PPXXPPPPPXG 584
            PP  PPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +3

Query: 528 GGGGGXXXPPXXPPPPPXGGGXXVXXGXPPPXPP 629
           G  G    P   P  P  G       G PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 555 PXXPPPPPXGGG 590
           P  PPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 564 PPPPPXGGG 590
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 565 PPPPPXGGG 591
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.155    0.549 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,951
Number of Sequences: 438
Number of extensions: 8894
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)