Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_M03
         (924 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.42 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   9.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +3

Query: 741 PPPXXXXKPXXXAPPXXXPPPPXX--PPXXPPXSPPT 845
           P P         AP    PP P    PP  PP +PP+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 25.8 bits (54), Expect = 0.56
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +3

Query: 765 PXXXAPPXXXP-PPPXXPPXXPPXSPPT 845
           P   +PP     PPP  PP  PP   P+
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 25.0 bits (52), Expect = 0.97
 Identities = 11/40 (27%), Positives = 13/40 (32%)
 Frame = +1

Query: 721 PXKXKXXPPPGXXXNPPXRXHRRXXPPPRXPPPXXPPXXP 840
           P      P P    +P          P + PPP  PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 13/53 (24%), Positives = 15/53 (28%)
 Frame = +1

Query: 628 PPPXPXPQXSPPPPXXPXRXXSPXXXPPXDXPXKXKXXPPPGXXXNPPXRXHR 786
           P P P P  SP  P            PP   P       P     +P    H+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 795 PPPPXXPPXXPPXSPP 842
           PP P  PP  P  S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +1

Query: 595 PPPXXGYCXXXPPPXPXPQXSPPPPXXPXRXXSPXXXPPXDXPXKXKXXPPP 750
           P P   YC   PP    P  S        R   P    P   P       PP
Sbjct: 125 PVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPP 176


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +1

Query: 595 PPPXXGYCXXXPPPXPXPQXSPPPPXXPXRXXSPXXXPPXDXPXKXKXXPPP 750
           P P   YC   PP    P  S        R   P    P   P       PP
Sbjct: 125 PVPVPVYCGNFPPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPP 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.146    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,857
Number of Sequences: 438
Number of extensions: 7375
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)