Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_M02
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 33 1.0
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 33 1.0
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 32 3.2
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 32 3.2
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 32 3.2
AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein. 31 4.2
D87071-1|BAA13240.1| 2035|Homo sapiens KIAA0233 protein. 31 7.3
BC150271-1|AAI50272.1| 2035|Homo sapiens family with sequence si... 31 7.3
AB161230-1|BAF03565.1| 2090|Homo sapiens Mib protein. 31 7.3
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -3
Query: 274 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 95
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG + +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630
Query: 94 RPFYGSWP 71
P Y S P
Sbjct: 631 TPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -3
Query: 274 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 95
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG + +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631
Query: 94 RPFYGSWP 71
P Y S P
Sbjct: 632 TPSYLSVP 639
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 276 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 148
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 276 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 148
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 276 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 148
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein.
Length = 326
Score = 31.5 bits (68), Expect = 4.2
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 220 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 306
+ R PV T+P+ L AF GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189
>D87071-1|BAA13240.1| 2035|Homo sapiens KIAA0233 protein.
Length = 2035
Score = 30.7 bits (66), Expect = 7.3
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 419 ESNPVRHDLSPLAAAT--GNRISRARYVG-GATEFLKWWPNYGYTRRTVFGICALLKPVT 589
E+NPV+ L P A G RI R G GAT FL+WW RT C LL V
Sbjct: 1881 EANPVKQ-LQPNEEADYLGVRIQLRREQGAGATGFLEWWVIELQECRT---DCNLLPMVI 1936
Query: 590 FGKRVGSS*SGKQTTAGSGGFFV 658
F +V G G G +V
Sbjct: 1937 FSDKVSPPSLGFLAGYGIMGLYV 1959
>BC150271-1|AAI50272.1| 2035|Homo sapiens family with sequence
similarity 38, member A protein.
Length = 2035
Score = 30.7 bits (66), Expect = 7.3
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 419 ESNPVRHDLSPLAAAT--GNRISRARYVG-GATEFLKWWPNYGYTRRTVFGICALLKPVT 589
E+NPV+ L P A G RI R G GAT FL+WW RT C LL V
Sbjct: 1881 EANPVKQ-LQPNEEADYLGVRIQLRREQGAGATGFLEWWVIELQECRT---DCNLLPMVI 1936
Query: 590 FGKRVGSS*SGKQTTAGSGGFFV 658
F +V G G G +V
Sbjct: 1937 FSDKVSPPSLGFLAGYGIMGLYV 1959
>AB161230-1|BAF03565.1| 2090|Homo sapiens Mib protein.
Length = 2090
Score = 30.7 bits (66), Expect = 7.3
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 419 ESNPVRHDLSPLAAAT--GNRISRARYVG-GATEFLKWWPNYGYTRRTVFGICALLKPVT 589
E+NPV+ L P A G RI R G GAT FL+WW RT C LL V
Sbjct: 1936 EANPVKQ-LQPNEEADYLGVRIQLRREQGAGATGFLEWWVIELQECRT---DCNLLPMVI 1991
Query: 590 FGKRVGSS*SGKQTTAGSGGFFV 658
F +V G G G +V
Sbjct: 1992 FSDKVSPPSLGFLAGYGIMGLYV 2014
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,019,054
Number of Sequences: 237096
Number of extensions: 2922913
Number of successful extensions: 14970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14969
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -