Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L24
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   223   3e-59
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    30   0.38 
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   6.2  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  223 bits (544), Expect = 3e-59
 Identities = 105/150 (70%), Positives = 121/150 (80%)
 Frame = +3

Query: 114 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 293
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 294 AQVXFVTGKKILRIMKAMGLAPDLPEDLYYLIXKAVAMRKHLERXRKNKDSXXXLILVES 473
            QV F+TG+KI+RI+KA GLAP+LPEDLY LI KAV++RKHLER RK+KDS   LIL+ES
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120

Query: 474 XIHRLARYYKTKSVLPPNWKYESSTASALV 563
            IHRLARYY+    LPP WKYES+TASALV
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALV 150


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 179  DTAAVRQRRLGDTLTRSVHTTHVCGFLLNRRSDNDNKRIQKDGPK 45
            +T+A R RRLG    +  ++ H    + +++ D D+K +Q D PK
Sbjct: 961  NTSATRPRRLGSRTFQGFNSNH--SNINSKKDDLDDKEMQIDAPK 1003


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -1

Query: 245 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 90
           TL+SK    FL+    Q Q      AV QR   D L  SV +  V   +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,017
Number of Sequences: 5004
Number of extensions: 46738
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)