Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L24
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...   201   5e-52
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...   180   2e-45
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...   173   2e-43
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416    127   1e-29
09_04_0074 - 14336430-14338268                                         30   2.1  
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821...    30   2.8  
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    29   4.9  

>08_01_0119 -
           951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score =  201 bits (491), Expect = 5e-52
 Identities = 95/140 (67%), Positives = 110/140 (78%)
 Frame = +3

Query: 114 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 293
           MGRMH+ GKGIS SA+PY+R+ P+W+K  A DV+E I K  KKG  PSQIGV+LRD HG+
Sbjct: 1   MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 294 AQVXFVTGKKILRIMKAMGLAPDLPEDLYYLIXKAVAMRKHLERXRKNKDSXXXLILVES 473
             V  VTG KILRI+KA GLAP++PEDLY+LI KAVA+RKHLER RK+KDS   LILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 474 XIHRLARYYKTKSVLPPNWK 533
            IHRLARYYK    LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140


>07_03_0978 +
           23099690-23100108,23100530-23100564,23100868-23100926,
           23101269-23101310,23102003-23102065,23102172-23102253,
           23102570-23102609,23102657-23102753
          Length = 278

 Score =  180 bits (437), Expect = 2e-45
 Identities = 83/140 (59%), Positives = 106/140 (75%)
 Frame = +3

Query: 114 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 293
           MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG  PSQIG +LRD+H V
Sbjct: 1   MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60

Query: 294 AQVXFVTGKKILRIMKAMGLAPDLPEDLYYLIXKAVAMRKHLERXRKNKDSXXXLILVES 473
                VTG KILR++K+ GLAP++PEDLY+LI KAVAMRKHLER RK+KD+   LILVES
Sbjct: 61  PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120

Query: 474 XIHRLARYYKTKSVLPPNWK 533
            +HRL RYY+    +P  +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score =  173 bits (421), Expect = 2e-43
 Identities = 91/149 (61%), Positives = 103/149 (69%), Gaps = 17/149 (11%)
 Frame = +3

Query: 138 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 266
           KGIS SALPY+R+ P+WLK  A DV                 +E I K  KKG  PSQIG
Sbjct: 31  KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90

Query: 267 VMLRDSHGVAQVXFVTGKKILRIMKAMGLAPDLPEDLYYLIXKAVAMRKHLERXRKNKDS 446
           V+LRD HG+  V  VTG KILRI+KA GLAP++PEDLY+LI KAVA+RKHLER RK+KDS
Sbjct: 91  VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150

Query: 447 XXXLILVESXIHRLARYYKTKSVLPPNWK 533
              LILVES IHRLARYYK    LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179


>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
          Length = 218

 Score =  127 bits (307), Expect = 1e-29
 Identities = 64/106 (60%), Positives = 74/106 (69%)
 Frame = +3

Query: 207 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVXFVTGKKILRIMKAMGLAPDLPEDLYYL 386
           +V+E I K  K G   SQIGV+LR  HG+  V  +   KIL I+KA GLAP + EDLY+L
Sbjct: 89  EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148

Query: 387 IXKAVAMRKHLERXRKNKDSXXXLILVESXIHRLARYYKTKSVLPP 524
           I KAVA+RKHLER RK+KDS   LILVES IHRL RYYK    LPP
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194


>09_04_0074 - 14336430-14338268
          Length = 612

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 48  WAIFLDSLVVVVRSAI**KAANMGRMHAPGKGISQSALPY--RRSVPTWLKLTADD 209
           W + L SL +VV S +   A++  R  A    +  S LP+  RR +P  L+L   D
Sbjct: 34  WRVLLQSLALVVTSGLSASASHSHRGRALSSRLLNSLLPHAPRRLLPALLRLLPGD 89


>01_06_1243 -
           35681569-35681712,35681799-35681904,35682054-35682149,
           35682234-35682361,35683000-35683260,35683343-35683428,
           35683524-35683616,35683720-35683815,35683946-35684300
          Length = 454

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 150 GRYPYQERAYDPCLRLFT 97
           GRYP+  RAYDPC   ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +3

Query: 153 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVXFVTG-KKIL 329
           S +PY     T   L  D++K+Q+ +   KG+T   + V++   +   QV      KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274

Query: 330 RIMKAMG---LAPDLPEDLYYLIXKAVAMRKHLERXRKNKDSXXXLILVES 473
              K  G   LA ++ ++  Y+  K     K + R     D    L+  +S
Sbjct: 275 EFCKNEGLVLLADEVYQENIYVEDKKFHSFKKIARSMGYTDDDLPLVSFQS 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,947,456
Number of Sequences: 37544
Number of extensions: 332121
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)