Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L24
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 230 FVNLFLYIVGSQFQPGR 180
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 230 FVNLFLYIVGSQFQPGR 180
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 230 FVNLFLYIVGSQFQPGR 180
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 429 RKNKDSXXXLILVESXIHRLARYYKTKSVLPPNWKY 536
           R N D    L    +  +   +YYK+ S +P N+ +
Sbjct: 281 RTNSDPRMILTEAYTEFNLTIKYYKSGSTVPFNFMF 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,770
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)