Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L23
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...   116   3e-27
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.67 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   2.7  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   6.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   8.3  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   8.3  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score =  116 bits (280), Expect = 3e-27
 Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 3/209 (1%)
 Frame = +3

Query: 234 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 413
           SR ++LAW+N        +IE+   G A  Q  D ++   +P+K++ F+ N E++YI N+
Sbjct: 4   SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62

Query: 414 KILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQREGLPM 593
           K+LQ  F K G+DK+V  ++L + + QDN EF+QW K+F+D  Y G  YDA+A+R     
Sbjct: 63  KVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARRGN--R 120

Query: 594 GHGGSXXXXXXXXXXXXXXGRQ--SRS*TPNHWE-S*YNSQISTS*FVTDKSKCQG*FES 764
           G   +               RQ  S S TP+  + S  N+ +S++       + +   + 
Sbjct: 121 GPANTRVMNSSAGATGPSRRRQVSSGSSTPSMTKSSANNNNVSSTANTAAVLRAKQAQQQ 180

Query: 765 CG*IKPSDNELKXTVDGLEKERDFYFGXL 851
              ++    E+  T+ GLE+ERDFYF  L
Sbjct: 181 ITSLETQLYEVNETMFGLERERDFYFNKL 209


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 357 PMKRIKFKTNLEHEYIQNFKILQAGFK 437
           P KR+K KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 52  SKKNEVSVLDKNSNKFDNLSHTAKLFR 132
           + +NE + + K SN  DNL+ +++LFR
Sbjct: 263 NSQNEHTEVQKKSNSIDNLTPSSELFR 289


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/37 (24%), Positives = 25/37 (67%)
 Frame = +2

Query: 218 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 328
           Y++  ++  ++S+ +  SP+ + E+++ ++R  +LPV
Sbjct: 58  YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 372 KFKTNLEHEYIQNFKILQAGFK 437
           K  TNLE+EY   +KI+Q  FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 374 FDSFHWYTAREQHVHELAIGGTCTQLF 294
           FD   WYT R + +  L+I     QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,702,333
Number of Sequences: 5004
Number of extensions: 78671
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)