Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L22
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|...    34   0.024
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    33   0.042
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  

>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 296 YKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYK 451
           +KN  +LS+F +   GRI PR  TGL  + Q  + + I +A+    MP  YK
Sbjct: 110 WKNPVILSRFVTEL-GRIKPRGDTGLTAKNQRLLSRAIRRARAAGIMPTKYK 160


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 24/84 (28%), Positives = 38/84 (45%)
 Frame = +2

Query: 176 TFRTQSTNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYP 355
           T +T S+    D   PV  + P KK +   +   LN+   Y+    L + Q P    +  
Sbjct: 369 TVQTSSSAAPVDSAEPVAYQ-PIKKPIDPMLGYPLNVAATYRLDESLLRLQMPSIVDLGT 427

Query: 356 RHITGLCKRKQMQVEQEITKAQDL 427
            +I  LC   Q  +E+EIT A ++
Sbjct: 428 VNIQALCMSLQSTLEKEITYAMNV 451


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 254 LKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITGLCK 379
           +K C+L   N   +Y    +L     PYT RI  +    +CK
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICK 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,283
Number of Sequences: 5004
Number of extensions: 50763
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)