Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L22
(901 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005186-1|AAH05186.1| 142|Homo sapiens mitochondrial ribosomal... 114 5e-25
AF151892-1|AAD34129.1| 142|Homo sapiens CGI-134 protein protein. 114 5e-25
BC010364-1|AAH10364.1| 196|Homo sapiens mitochondrial ribosomal... 45 3e-04
AL136131-6|CAC19510.1| 196|Homo sapiens mitochondrial ribosomal... 45 3e-04
AK001410-1|BAA91675.1| 196|Homo sapiens protein ( Homo sapiens ... 45 3e-04
AB049952-1|BAB41005.1| 196|Homo sapiens mitochondrial ribosomal... 45 3e-04
AL136131-5|CAI19963.2| 264|Homo sapiens mitochondrial ribosomal... 44 6e-04
AL136131-7|CAI19964.1| 127|Homo sapiens mitochondrial ribosomal... 43 0.001
BX248507-3|CAI18569.1| 258|Homo sapiens mitochondrial ribosomal... 42 0.003
BX119957-6|CAM25911.1| 258|Homo sapiens mitochondrial ribosomal... 42 0.003
BC005373-1|AAH05373.1| 258|Homo sapiens mitochondrial ribosomal... 42 0.003
AL845353-9|CAI41878.1| 258|Homo sapiens mitochondrial ribosomal... 42 0.003
AL732442-19|CAI17765.1| 258|Homo sapiens mitochondrial ribosoma... 42 0.003
AL662825-11|CAI17840.1| 258|Homo sapiens mitochondrial ribosoma... 42 0.003
AL662800-10|CAI18162.2| 258|Homo sapiens mitochondrial ribosoma... 42 0.003
AF100761-1|AAD43025.1| 258|Homo sapiens PTD017 protein. 42 0.003
AB202094-2|BAE78614.1| 258|Homo sapiens mitochondrial ribosomal... 42 0.003
AB110934-1|BAD13700.1| 258|Homo sapiens MRPS18B protein protein. 42 0.003
AB110933-1|BAD13699.1| 258|Homo sapiens MRPS18B protein protein. 42 0.003
>BC005186-1|AAH05186.1| 142|Homo sapiens mitochondrial ribosomal
protein S18C protein.
Length = 142
Score = 114 bits (274), Expect = 5e-25
Identities = 51/97 (52%), Positives = 70/97 (72%)
Frame = +2
Query: 191 STNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITG 370
S + + D P+ MENP+K+ LK+CILC ++D YKN +LLSQF SP+TG IY RHITG
Sbjct: 41 SQQVSSNEDLPISMENPYKEPLKKCILCGKHVD--YKNVQLLSQFVSPFTGCIYGRHITG 98
Query: 371 LCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKDPKL 481
LC +KQ ++ + I +AQ + +MP TYK +LKDPK+
Sbjct: 99 LCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKV 135
>AF151892-1|AAD34129.1| 142|Homo sapiens CGI-134 protein protein.
Length = 142
Score = 114 bits (274), Expect = 5e-25
Identities = 51/97 (52%), Positives = 70/97 (72%)
Frame = +2
Query: 191 STNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNYRLLSQFQSPYTGRIYPRHITG 370
S + + D P+ MENP+K+ LK+CILC ++D YKN +LLSQF SP+TG IY RHITG
Sbjct: 41 SQQVSSNEDLPISMENPYKEPLKKCILCGKHVD--YKNVQLLSQFVSPFTGCIYGRHITG 98
Query: 371 LCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKDPKL 481
LC +KQ ++ + I +AQ + +MP TYK +LKDPK+
Sbjct: 99 LCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKV 135
>BC010364-1|AAH10364.1| 196|Homo sapiens mitochondrial ribosomal
protein S18A protein.
Length = 196
Score = 45.2 bits (102), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 PVEMENPFKKELKQCILCKLNIDP--DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQ 394
P E NP QC +C+ N+ +Y + LLSQF P+ G + PR ITGLC+ + +
Sbjct: 57 PKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 395 VEQEITKAQDLAYMP 439
+E+ + A +P
Sbjct: 115 IEECVKMAHRAGLLP 129
>AL136131-6|CAC19510.1| 196|Homo sapiens mitochondrial ribosomal
protein S18A protein.
Length = 196
Score = 45.2 bits (102), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 PVEMENPFKKELKQCILCKLNIDP--DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQ 394
P E NP QC +C+ N+ +Y + LLSQF P+ G + PR ITGLC+ + +
Sbjct: 57 PKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 395 VEQEITKAQDLAYMP 439
+E+ + A +P
Sbjct: 115 IEECVKMAHRAGLLP 129
>AK001410-1|BAA91675.1| 196|Homo sapiens protein ( Homo sapiens
cDNA FLJ10548 fis, clone NT2RP2001969. ).
Length = 196
Score = 45.2 bits (102), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 PVEMENPFKKELKQCILCKLNIDP--DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQ 394
P E NP QC +C+ N+ +Y + LLSQF P+ G + PR ITGLC+ + +
Sbjct: 57 PKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 395 VEQEITKAQDLAYMP 439
+E+ + A +P
Sbjct: 115 IEECVKMAHRAGLLP 129
>AB049952-1|BAB41005.1| 196|Homo sapiens mitochondrial ribosomal
protein S18a protein.
Length = 196
Score = 45.2 bits (102), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 PVEMENPFKKELKQCILCKLNIDP--DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQ 394
P E NP QC +C+ N+ +Y + LLSQF P+ G + PR ITGLC+ + +
Sbjct: 57 PKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 395 VEQEITKAQDLAYMP 439
+E+ + A +P
Sbjct: 115 IEECVKMAHRAGLLP 129
>AL136131-5|CAI19963.2| 264|Homo sapiens mitochondrial ribosomal
protein S18A protein.
Length = 264
Score = 44.4 bits (100), Expect = 6e-04
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 221 PVEMENPFKKELKQCILCKLNIDP--DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQ 394
P E NP QC +C+ N+ +Y + LLSQF P+ G + PR ITGLC+ + +
Sbjct: 57 PKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 395 VEQEITKAQDLAYMPY 442
+E+ + A P+
Sbjct: 115 IEECVKMAHRAGRRPW 130
>AL136131-7|CAI19964.1| 127|Homo sapiens mitochondrial ribosomal
protein S18A protein.
Length = 127
Score = 43.2 bits (97), Expect = 0.001
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 221 PVEMENPFKKELKQCILCKLNIDP--DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQ 394
P E NP QC +C+ N+ +Y + LLSQF P+ G + PR ITGLC+ + +
Sbjct: 57 PKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRK 114
Query: 395 VEQEITKA 418
+E+ + A
Sbjct: 115 IEECVKMA 122
>BX248507-3|CAI18569.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>BX119957-6|CAM25911.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>BC005373-1|AAH05373.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AL845353-9|CAI41878.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AL732442-19|CAI17765.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AL662825-11|CAI17840.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AL662800-10|CAI18162.2| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AF100761-1|AAD43025.1| 258|Homo sapiens PTD017 protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AB202094-2|BAE78614.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AB110934-1|BAD13700.1| 258|Homo sapiens MRPS18B protein protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
>AB110933-1|BAD13699.1| 258|Homo sapiens MRPS18B protein protein.
Length = 258
Score = 41.9 bits (94), Expect = 0.003
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 263 CILCKLN-IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMP 439
C +C+ + + D++N +LL QF +TG I+ TG+C ++ ++ Q I KA+D +
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLI 164
Query: 440 Y 442
Y
Sbjct: 165 Y 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,795,292
Number of Sequences: 237096
Number of extensions: 1769302
Number of successful extensions: 3542
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3540
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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