Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L22
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...   106   2e-23
L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical pr...    44   2e-04
AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical ...    29   3.4  
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    28   7.9  

>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score =  106 bits (255), Expect = 2e-23
 Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
 Frame = +2

Query: 116 ALFKSFFARQMLSTHQAVLSTFRTQSTNLKPDPDAPVEMEN-PFKKELKQCILCKLNIDP 292
           +L +SF   Q   T +   S+  TQ +      D PV +EN P+ KE ++  LC   ++ 
Sbjct: 7   SLVRSFIRPQ---TFRLCSSSSTTQGSPSVSSDDEPVILENNPYTKEPRKSFLCSTGVEL 63

Query: 293 DYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKIFLKD 472
           DYKN RLL QF S ++GR+Y RHITGLC   + ++ + I K++   +MP   K   + +D
Sbjct: 64  DYKNSRLLQQFVSTFSGRVYDRHITGLCDENKKKLIEAIAKSRRAGFMPIFVKDPKYTRD 123

Query: 473 PKLFDPENPVRSHRF 517
           PKLFDP  P+R H F
Sbjct: 124 PKLFDPLKPIRPHSF 138


>L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical
           protein ZC262.8 protein.
          Length = 183

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
 Frame = +2

Query: 245 KKELKQCILCKLN--IDPDYKNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKA 418
           +K+ + C LC  N  I   YK+  +L QF     G + PR +TGLCK++Q+++E+ + +A
Sbjct: 62  RKDDELCSLCTCNVPIKLTYKDVLILEQFMRD-DGTVLPRQLTGLCKKQQLRMERCVMQA 120


>AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.6 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 41  FDLSCSH*ICLHAAYF-LSINTYMKMALF 124
           F LS  H +CLH  YF  ++N  +KM LF
Sbjct: 26  FHLSLDHEVCLHPKYFGPNLNETIKMKLF 54


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 125 KSFFARQMLSTHQAVLSTFRTQSTNLKPDPDAPVEMENPF 244
           KSF + ++L  HQ +  T ++   +LK   DAPV M+  F
Sbjct: 27  KSFSSTKLLQQHQQMFHTDKSVLLSLK-STDAPVGMDRAF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,778
Number of Sequences: 27780
Number of extensions: 296319
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)