Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L22
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.31 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 299 KNYRLLSQFQSPYTGRIYPRHITGLCKRKQMQVEQEITKAQDLAYMPYTYKHKI 460
           +N+  + ++  P  G I P      C+ K    + +   AQD    PYT KHKI
Sbjct: 411 QNFYYIEEYL-PGNGVIIPDDPPIGCECKTCNSKTKCCFAQDDGLCPYTLKHKI 463


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -1

Query: 283 IKFTEYTLFQFFFEWIFHFNWGIWVWFE 200
           +K T   +  FF  W  ++   +W W +
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLWYWID 286


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 569 YYAN*LTKYH 540
           YYAN  TKYH
Sbjct: 717 YYANLYTKYH 726


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 341 GRIYPRHITGLCKRKQMQVEQEIT 412
           GR+   +I+ LCK   + V Q+++
Sbjct: 124 GRVRDHNISALCKELGISVVQKVS 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,818
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)