Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L21
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 96 3e-20
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 92 4e-19
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 92 4e-19
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 89 3e-18
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 82 5e-16
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 82 5e-16
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 79 4e-15
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 75 9e-14
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 71 8e-13
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 67 1e-11
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 66 4e-11
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 66 4e-11
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 62 5e-10
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 60 2e-09
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 57 2e-08
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 54 1e-07
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 53 2e-07
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 4e-05
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 44 1e-04
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 34 0.16
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 32 0.48
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 31 0.84
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 31 1.5
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 2.6
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 2.6
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 29 3.4
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 4.5
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.5
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 4.5
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 4.5
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 96.3 bits (229), Expect = 3e-20
Identities = 42/74 (56%), Positives = 52/74 (70%)
Frame = +1
Query: 412 YAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLL 591
+AG +KL L P YP A P V+FMT +HPN+D G ICLDILKDKW+ +RTVLL
Sbjct: 48 FAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 107
Query: 592 SIQSLLAEPNTQSP 633
SIQ+LL+ PN + P
Sbjct: 108 SIQALLSAPNPEDP 121
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRT 582
+T + +KLSLEF YP PP VKF++ FHPNV G ICLDIL+++W+ YDV
Sbjct: 45 ETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAA 104
Query: 583 VLLSIQSLLAEPNTQSP 633
+L SIQSLL EPN SP
Sbjct: 105 ILTSIQSLLDEPNPNSP 121
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRT 582
+T + +KLSLEF YP PP VKF++ FHPNV G ICLDIL+++W+ YDV
Sbjct: 45 ETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAA 104
Query: 583 VLLSIQSLLAEPNTQSP 633
+L SIQSLL EPN SP
Sbjct: 105 ILTSIQSLLDEPNPNSP 121
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 89.4 bits (212), Expect = 3e-18
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDT-CGLICLDILKDKWTALYDVRT 582
T YAG + L ++ P+ YP++PP VKF T +HPNV + G+ICLDILKD+W A +RT
Sbjct: 49 TPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRT 108
Query: 583 VLLSIQSLLAEPNTQSP 633
VLLSIQ+L+ P + P
Sbjct: 109 VLLSIQALMCTPEPKDP 125
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 82.2 bits (194), Expect = 5e-16
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = +1
Query: 412 YAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLL 591
Y G + L++ FP YP+ PP V F T +HPN+++ G ICLDIL+ +W+ + VLL
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
Query: 592 SIQSLLAEPNTQSPFKP 642
SI SLL +PN P P
Sbjct: 105 SICSLLCDPNPDDPLVP 121
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +3
Query: 288 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLEN 407
KR+QKEL +L R SA P ++LF W TI GP E+
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPES 43
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 82.2 bits (194), Expect = 5e-16
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = +1
Query: 412 YAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLL 591
Y G + L++ FP YP+ PP V F T +HPN+++ G ICLDIL+ +W+ + VLL
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
Query: 592 SIQSLLAEPNTQSPFKP 642
SI SLL +PN P P
Sbjct: 105 SICSLLCDPNPDDPLVP 121
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +3
Query: 288 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLEN 407
KR+QKEL +L R SA P ++LF W TI GP E+
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPES 43
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 79.0 bits (186), Expect = 4e-15
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 13/90 (14%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILK----------- 549
KT+Y G +K S+ FP++YPY+PP +KF T +HPNV G +C+ IL
Sbjct: 51 KTLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGEL 110
Query: 550 --DKWTALYDVRTVLLSIQSLLAEPNTQSP 633
++W VRT+LLS+ SLL EPNT SP
Sbjct: 111 ACERWNPTQSVRTILLSVISLLNEPNTSSP 140
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 74.5 bits (175), Expect = 9e-14
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 16/92 (17%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVV---------------KFMTPCFHPNVDT-CGLICL 537
T YAG +++ ++ P YP+ PP V KF+T +HPN+ + G ICL
Sbjct: 63 TPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICL 122
Query: 538 DILKDKWTALYDVRTVLLSIQSLLAEPNTQSP 633
DILKDKWTA +RTVLLS+Q++L P P
Sbjct: 123 DILKDKWTASLTLRTVLLSLQAMLCSPEPSDP 154
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 13/89 (14%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKD----------- 552
T+Y G +K L+FP YP PP +KF++ +HPN+D G +C+ IL D
Sbjct: 46 TLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERP 105
Query: 553 --KWTALYDVRTVLLSIQSLLAEPNTQSP 633
+W ++ V T+LLS+ S+L +PN +SP
Sbjct: 106 EERWLPVHTVETILLSVISMLTDPNFESP 134
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVD-TCGLICLDILKDKWTALYDVRT 582
T Y +++ ++ P+ YP+ P + F+ FHPN+D G +CLD++ WTALYD+
Sbjct: 45 TAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALYDLTN 104
Query: 583 VL-LSIQSLLAEPNTQSP 633
+ + LL PN P
Sbjct: 105 IFDTFLPQLLTYPNAADP 122
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 65.7 bits (153), Expect = 4e-11
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDK--WTALYDVR 579
T++ G Y++ + F + +P PP KF P FHPNV G +CL +L + W ++
Sbjct: 51 TIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIK 110
Query: 580 TVLLSIQSLLAEPNTQSP 633
+L+ IQ LL PN + P
Sbjct: 111 QLLIGIQDLLNHPNIEDP 128
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 65.7 bits (153), Expect = 4e-11
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDK--WTALYDVR 579
T++ G Y++ + F + +P PP KF P FHPNV G +CL +L + W ++
Sbjct: 51 TIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIK 110
Query: 580 TVLLSIQSLLAEPNTQSP 633
+L+ IQ LL PN + P
Sbjct: 111 QLLIGIQDLLNHPNIEDP 128
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDIL------------ 546
+T +A + + FP YP +PP ++F FHPN+ G +C+ IL
Sbjct: 46 ETCFANGVFPARITFPQDYPLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYEL 105
Query: 547 -KDKWTALYDVRTVLLSIQSLLAEPNTQSP 633
++W+ + + +LLS+ S+LAEPN +SP
Sbjct: 106 SNERWSPVQSIEKILLSVVSMLAEPNDESP 135
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 288 KRLQKELMELMRCSDKGISAFP-ESENLFKWIGTINGPLENC 410
KRL E EL +GI A P + +N F+W I GP E C
Sbjct: 7 KRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETC 48
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 60.5 bits (140), Expect = 2e-09
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDIL-KDKWTALYDVR 579
K Y +K+ + FP YP+ PP V F T +HPNVD G CL I+ + W
Sbjct: 43 KEPYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTE 102
Query: 580 TVLLSIQSLLAEPNTQSPFK 639
V++++ SL+ EP P +
Sbjct: 103 QVMMALLSLINEPEPSHPIR 122
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFM--TPCFHPNVDTCGLICLDILKDKWTALYDVR 579
T+YAG + L F YP+ P V F+ T HP++ + G ICL IL D WT V+
Sbjct: 48 TLYAGEVFMLQFTFGPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQ 107
Query: 580 TVLLSIQSLLA 612
+V LSI S+L+
Sbjct: 108 SVCLSILSMLS 118
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 412 YAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDIL-KDKWTALYDVRTVL 588
+ G +Y++S+ F + +P PP+ +F TP HPNVD G I L +L ++ W++ ++ +L
Sbjct: 83 WEGGEYEVSVNF-HKWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLL 141
Query: 589 LSIQSLLAEPN 621
I +LLA P+
Sbjct: 142 REISNLLATPD 152
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTC-GLICL-DILKDKWTALYDV 576
+T Y G ++L ++ SYP+ P VKF+T +HP+V G ICL D+ W +
Sbjct: 390 ETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTI 449
Query: 577 RTVLLSIQSLLAEPNTQSP 633
VL+ IQS ++ N + P
Sbjct: 450 YKVLIVIQSWMSNFNEKEP 468
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 52.0 bits (119), Expect = 6e-07
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 409 VYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVD--TCGLICLDILKDKWTALYDVRT 582
+Y + L+L+ YP+ PP +KF +HPNVD TC L +L++ W +
Sbjct: 56 LYKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMED 115
Query: 583 VLLSIQSLLAEPNTQSP 633
VLL++ LL EP+ P
Sbjct: 116 VLLNLIVLLNEPDLSRP 132
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 409 VYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILK 549
+Y G K++ + P Y PPVVK +T +HPN++ G ICL IL+
Sbjct: 71 IYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILR 117
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 46.0 bits (104), Expect = 4e-05
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTP-----CFHPNVDTCGLICLDIL-------K 549
T YA ++ + FP YP++PP F+T F+PN+ G ICL IL +
Sbjct: 455 TPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPE 514
Query: 550 DKWTALYDVRTVLLSIQSLL 609
+KW + VL+SIQ ++
Sbjct: 515 EKWNPYCSLMQVLVSIQEVI 534
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTP--CFHPNVDTCGLICLDILKDKWTALYDV 576
KT Y G Y L FP +P+ PP + +TP F N C L D D W + V
Sbjct: 49 KTPYEGGIYMGKLLFPKDFPFKPPAILMLTPNGRFQTNTRLC-LSISDYHPDTWNPAWTV 107
Query: 577 RTVLLSIQSLLAEPNTQSPFKPASIISMAEPSCL*K 684
T++ + S + N P + + S +E L K
Sbjct: 108 STIITGLMSFM---NDNQPTLGSLVTSESERKLLAK 140
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTP--CFHPNVDTCGLICLDILKDKWTALYDVR 579
T + G Y + F ++P++PP + +TP F N C L D + W + V
Sbjct: 61 TPFYGGYYWGKVIFKENFPWSPPAITMITPNGRFQTNTRLC-LSISDYHPESWNPGWTVS 119
Query: 580 TVLLSIQSLLAE 615
+L+ + S + E
Sbjct: 120 AILIGLHSFMNE 131
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 288 KRLQKELMELMRCSDKGISAFPESENLFKWIGTING 395
+RLQK+ +LM+ GI A P +N+ +W + G
Sbjct: 22 RRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRG 57
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 32.3 bits (70), Expect = 0.48
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +1
Query: 403 KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVD-TCGLI---CLDILKDKWTALY 570
+T Y Y L ++ +YP PP V+F T V+ + G+I L L++ W+ Y
Sbjct: 50 RTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSY 108
Query: 571 DVRTVLLSIQS--LLAEPN 621
++TVL I+ ++A+ N
Sbjct: 109 MIKTVLEDIRKNMMMAKEN 127
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 288 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPL 401
+RL KE MEL + ++ A P +NLF+W TI G L
Sbjct: 13 RRLMKEAMELRQPTEM-YHAQPMEDNLFEWHFTIRGTL 49
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTP--CFHPNVDTCGLICLDILKDKWTALYDVR 579
T + G Y + FP YP PP + +TP F N C L + W + +R
Sbjct: 51 TDFEGGIYHGRIIFPADYPMKPPNLILLTPNGRFELNKKVC-LSISGYHPETWLPSWSIR 109
Query: 580 TVLLSIQSLL 609
T LL++ L
Sbjct: 110 TALLALIGFL 119
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 288 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLEN 407
KR+QKEL +L R S ++L+ W TI GP E+
Sbjct: 4 KRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPES 43
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 364 TSSNGSGPSMDL*KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLI 531
TSSNG+ PS+ T +G + P + PPV P P T GL+
Sbjct: 295 TSSNGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPRRNPVVSPKNSTAGLL 350
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 364 TSSNGSGPSMDL*KTVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLI 531
TSSNG+ PS+ T +G + P + PPV P P T GL+
Sbjct: 295 TSSNGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPRRNPVVSPKNSTAGLL 350
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 406 TVYAGHKYKLSLEFPNSYPYAPPVVKFMT 492
T Y +++ L FP++YP A P +KF T
Sbjct: 41 TPYETGVFEVDLTFPDNYPNALPQIKFQT 69
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 500 KQGVINLTTGGAYGYEFGNSS 438
K G T GG+YGY +GNSS
Sbjct: 198 KTGDTGKTPGGSYGYGYGNSS 218
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 500 KQGVINLTTGGAYGYEFGNSS 438
K G T GG+YGY +GNSS
Sbjct: 208 KTGDTGKTPGGSYGYGYGNSS 228
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 500 KQGVINLTTGGAYGYEFGNSS 438
K G T GG+YGY +GNSS
Sbjct: 311 KTGDTGKTPGGSYGYGYGNSS 331
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 500 KQGVINLTTGGAYGYEFGNSS 438
K G T GG+YGY +GNSS
Sbjct: 279 KTGDTGKTPGGSYGYGYGNSS 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,896,612
Number of Sequences: 27780
Number of extensions: 386831
Number of successful extensions: 920
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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