Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L20
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.38 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.66 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.66 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.87 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.87 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   4.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   4.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 266 PSGVETILSTLSSXETGAGKHVPRAVFVDLEPTV 367
           P G E++ S   +      +H+P A   D E TV
Sbjct: 406 PDGFESVTSQYKNIREDDARHIPHASVTDSENTV 439


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 539 LQGFLIFHSFGGGTALGS 592
           L+G +I HS+GGG   GS
Sbjct: 656 LRGSIIDHSYGGGFGFGS 673


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 539 LQGFLIFHSFGGGTALGS 592
           L+G +I HS+GGG   GS
Sbjct: 694 LRGSIIDHSYGGGFGFGS 711


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 556 LPLLRWRYGSGFTS 597
           LPLL W YG GF S
Sbjct: 158 LPLLVWIYGGGFMS 171


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 556 LPLLRWRYGSGFTS 597
           LPLL W YG GF S
Sbjct: 158 LPLLVWIYGGGFMS 171


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 335  GVRACQLRSRLKKVLKESSPPPMVL 261
            G+R C     L  VL+ S+P P+VL
Sbjct: 1094 GLRLCLHHRDLPCVLRASTPAPVVL 1118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = +1

Query: 610 RLSVDYG-KKSKLEFAIYPAPQVSTXXRRALQLYPHHPHNP*STLTVLSWSTMXPSMTSA 786
           R +V YG  +S L   +Y    +      +L     HPH P +  T ++  T   + T+ 
Sbjct: 612 RAAVIYGIPRSTLRNKVYKLA-MERERDASLSSTHSHPHEPGAPATTITTITTTTTTTTT 670

Query: 787 AVXRH*XPNLNQPESS 834
                  PN  Q  S+
Sbjct: 671 TTTTTTTPNTTQNASA 686



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 585 RAVPPPKEWKIRNPC 541
           R  PPP++WK  + C
Sbjct: 413 RTSPPPEDWKPLDKC 427


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 208 PSRHYRSGLR 179
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 620 LTTARSLNWSSPSTPRLRFPLXVVEPYNSI 709
           L++  +  W+    PR++ PL  ++ Y  I
Sbjct: 9   LSSLVTFGWTLEDAPRVKTPLGAIKGYYKI 38


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 271 RWSCLWASGHQAGCRAPGSKAPSRHYR 191
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 271 RWSCLWASGHQAGCRAPGSKAPSRHYR 191
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 271 RWSCLWASGHQAGCRAPGSKAPSRHYR 191
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 620 LTTARSLNWSSPSTPRLRFPLXVVEPYNSI 709
           L++  +  W+    PR++ PL  ++ Y  I
Sbjct: 9   LSSLVTFGWTLEDAPRVKTPLGAIKGYYKI 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,219
Number of Sequences: 438
Number of extensions: 5337
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)