Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L19
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    66   4e-11
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     31   1.6  
11_06_0478 + 24073295-24074172,24074790-24075090                       30   2.9  
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540...    30   2.9  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     29   5.0  

>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 41/108 (37%), Positives = 61/108 (56%)
 Frame = +1

Query: 319 ITWNSISRKPETPIFLHIRREKQPIPXPEXTGDGPXXXITRLAIGVEGGFDPXCGKPKXT 498
           + WN    K   P++LHI + ++P P  E   D P    T LAIGVEGGF     +P+  
Sbjct: 53  VAWNY--EKSGNPVYLHIVQRRKPEPDDE--ADRPLKKPTLLAIGVEGGFTDQ--EPE-- 104

Query: 499 YTDHYXVVVLPXXHTXPWPDPNLPEPVKKSVXAVIDAESPFKXAELAA 642
           Y + + +V+LP   + P+P  +LPE V+ +V  VI AES  +  +LA+
Sbjct: 105 YDEAFEIVILPEFTSLPFPSIDLPEKVRIAVDKVILAESADRKQQLAS 152



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/73 (42%), Positives = 40/73 (54%)
 Frame = +3

Query: 195 KXKXPGPHQLVYKDECVYSFDNPESETGLYVSLVSXLGXGRNYVEQYFQKTGNADLLTYQ 374
           K + P P   ++KDEC  SFD P SE GLYV + S LG GR +V   ++K+GN   L   
Sbjct: 10  KVRIPEPGSRIHKDECCVSFDTPRSEGGLYVDMTSFLGFGREHVAWNYEKSGNPVYLHIV 69

Query: 375 KRETTNP*XRAXR 413
           +R    P   A R
Sbjct: 70  QRRKPEPDDEADR 82



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = +3

Query: 678 SVHSVXLKQLDNGXRIPPSXXKCXKCXXXXXXXXXXXXXSILCGXXLFNXPXG 836
           S H++ LKQLDNG  +PP+  KC KC              ILCG  L++   G
Sbjct: 161 SAHAMDLKQLDNGVIVPPTGWKCSKCDKTENLWLNLTDGMILCGRRLWDGSGG 213


>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 376  REKQPIPXPEXTGDGPXXXITRLAIGVEGGFDPXCGKP 489
            R +QP P     G G    IT LA GV+ G DP C  P
Sbjct: 1333 RGEQPHPVETAAGSGTQRIITSLADGVQRGSDP-CRAP 1369


>11_06_0478 + 24073295-24074172,24074790-24075090
          Length = 392

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 433 ITRLAIGVEGGFDPXCGKPKXTYTDHYXVVVLPXXHTXPWPDPNLPEPVKKSVXAVIDAE 612
           +T + +G    F+P    P    + HY V ++P     P P P  P  ++    A   A 
Sbjct: 109 VTAIPVGEYLVFEPAVSSP----SPHYEVFLIPTVPGHPGPPPTPPAHIRLKPMAA--AA 162

Query: 613 SPFKXAE-LAALQG 651
           +PF   E LA+L+G
Sbjct: 163 APFCLDERLASLRG 176


>01_01_0699 +
           5405178-5405356,5405478-5405693,5405808-5405919,
           5406335-5406397,5406468-5406606,5406822-5406877,
           5408088-5408161,5408270-5408417,5408505-5408678,
           5408809-5408896,5408996-5409109,5409728-5409825,
           5409927-5410017,5410440-5410534,5410672-5410825,
           5410864-5410876,5411276-5411384
          Length = 640

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +1

Query: 322 TWNSISRKPETPI-FLHIRREKQPIPXPEXTGDGPXXXITRLAIGVEGG 465
           +W      P  P+  L       P P PE   D P   +T   +GV GG
Sbjct: 31  SWTPRPTSPLPPLSLLRATASMHPSPPPEGHSDQPVHGVTNTVVGVLGG 79


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 376  REKQPIPXPEXTGDGPXXXITRLAIGVEGGFDP 474
            R +QP P     G G    IT +A GV+ G DP
Sbjct: 1410 RGEQPHPVETAAGSGTQRIITSMADGVQHGSDP 1442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,990,104
Number of Sequences: 37544
Number of extensions: 344252
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)