Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L18
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    39   9e-04
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    39   9e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   8.7  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 309 GKVHGSLARAGKVKGQTP 362
           GKVHGSLARAGKVK QTP
Sbjct: 2   GKVHGSLARAGKVKSQTP 19



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 320 RIFGSCR*SQRTNPQSGKTTKKEE--RXLAVLXRRIQYNRRFVNVVQTFGRRRGPNSNS 490
           ++ GS   + +   Q+ K  K+E+  +      +R+ Y RRFVNV    G +R  N +S
Sbjct: 3   KVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 309 GKVHGSLARAGKVKGQTP 362
           GKVHGSLARAGKVK QTP
Sbjct: 2   GKVHGSLARAGKVKSQTP 19



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 320 RIFGSCR*SQRTNPQSGKTTKKEE--RXLAVLXRRIQYNRRFVNVVQTFGRRRGPNSNS 490
           ++ GS   + +   Q+ K  K+E+  +      +R+ Y RRFVNV    G +R  N +S
Sbjct: 3   KVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 89  AVASQSGQSXTRPGP 133
           AV+S SGQS  RPGP
Sbjct: 627 AVSSNSGQSSGRPGP 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,846
Number of Sequences: 5004
Number of extensions: 27516
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)