Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L18
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    46   5e-05
U40953-1|AAB52646.1|  120|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +2

Query: 320 RIFGSCR*SQRTNPQSGKTTK--KEERXLAVLXRRIQYNRRFVNVVQTFGRRRGPNSNS 490
           ++ GS   + +   Q+ K  K  K+++      RR+QY RR+VNV    G++RGPNSNS
Sbjct: 72  KVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPNSNS 130



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +3

Query: 300 LLGGKVHGSLARAGKVKGQTP 362
           LLGGKVHGSLARAGKV+ QTP
Sbjct: 68  LLGGKVHGSLARAGKVRAQTP 88


>U40953-1|AAB52646.1|  120|Caenorhabditis elegans Hypothetical
           protein F53B1.3 protein.
          Length = 120

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 338 CTSQRSVHFTTKQWHCQVLSSDDESSETRHES 243
           CT Q S      +WHC +   DD   E   ++
Sbjct: 53  CTQQHSEDLMMPRWHCPLQEEDDNDVEEEEKT 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,197
Number of Sequences: 27780
Number of extensions: 170788
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)