Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L16
(1066 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.84
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = +2
Query: 824 PXQXPXPGPPXHXSPRPXXRXSXXXCXPPPPPPXRNXXXXLXXPPXXEGSPSXXXGWGPX 1003
P P P P S PPPPPP N + PP +P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP-------PP 363
Query: 1004 PPXR 1015
PP R
Sbjct: 364 PPPR 367
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 905 PPPPPPXRNXXXXLXXPPXXEGSPSXXXGWGPXPPXRXGXXHPPXXPXXPXXP 1063
PPPPPP R PP GS + P PP P P P
Sbjct: 312 PPPPPPSRRNRGK---PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +2
Query: 836 PXPGPPXHXSPRPXXRXSXXXCXPPPPPPXRNXXXXLXXPPXXEGSPSXXXGWGPXP--P 1009
P P PP + PPPPP R+ PP S + P P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 1010 XRXGXXHPP 1036
R PP
Sbjct: 397 GRSAPALPP 405
Score = 27.1 bits (57), Expect = 4.5
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +2
Query: 821 PPXQXPXPGPPXHXSPRPXXRXSXXXCXPPPPPPXRNXXXXLXXPPXXEGSPSXXXGWGP 1000
PP P P P P S PP PPP PP S + P
Sbjct: 361 PPPPPPRSAPSTGRQP-PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP-VP 418
Query: 1001 XPPXRXGXXHPPXXPXXP 1054
PP P P P
Sbjct: 419 TPPSLPPSAPPSLPPSAP 436
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 806 PPXXXPPXQXPXPGPPXHXSPRPXXRXSXXXCXPPPPPP 922
P P P P P P P PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +2
Query: 797 LTHPPXXXPPXQXPXPGPPXHXSPRPXXRXSXXXCXPPPPPPXRNXXXXLXXPP 958
L PP P P P P +P P + PPPPPP PP
Sbjct: 729 LKSPPPPPPAVIVPTPAP----APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +2
Query: 908 PPPPPXRNXXXXLXXPPXXEGSPSXXXGWGPXPPXRXGXXHPPXXPXXPXXP 1063
PPPPP P P+ G P PP G P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +2
Query: 809 PXXXPPXQXPXPGPPXHXSPRPXXRXSXXXCXPPPPPPXRNXXXXLXXPPXXEGSP 976
P PP GPP P P PPPPPP + P + P
Sbjct: 748 PIPVPPPAPIMGGPPP--PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 906 PPXPPXXETXGPXSXXPPXXRVXPRAXGXGXXPPPGGXVXXTPP 1037
PP PP P P P G PPP G PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +2
Query: 842 PGPPXHXSP-RPXXRXSXXXCXPPPPPPXRNXXXXLXXPPXXEGSPSXXXGWGPXPP 1009
P P P RP P PPPP + PP G PS P PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS-----APPPP 1734
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 1034 GGGXHPXAXGGXXPXPXGXRXNPPPXGGXGXXXXXFXXGGXGGG 903
G G H GG P G P GG G GG GGG
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGPGGFGG-GPGGFGGGLGGFGGG 257
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 806 PPXXXPPXQXPXPGPPXHXSPR 871
PP PP Q P P PP + R
Sbjct: 15 PPGFEPPSQPPPPPPPGYVKKR 36
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 694 PPXXPPPPXXNTPXKTPXXP 753
PP PPPP P + P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 4.5
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Frame = +2
Query: 809 PXXXPPXQXPX-PGPPXHXSP----RPXXRXSXXXCXPPPPPPXR-NXXXXLXXPPXXEG 970
P P Q P P P +P RP R S PPPP R N + PP
Sbjct: 100 PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSS 159
Query: 971 SPS 979
S S
Sbjct: 160 SGS 162
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = +3
Query: 306 GLXPHPXKPAPXVXQRPXXFDXKVTPAPGGGREAVXPXXXKXPPPPXXRAXWPFGVTFXN 485
G+ P P KPA V P + P P G V P P P P V
Sbjct: 1177 GIPPVP-KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235
Query: 486 PPP 494
PP
Sbjct: 1236 APP 1238
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +2
Query: 824 PXQXPXPGPPXHXSPRPXXRXSXXXCXPPPPPPXRNXXXXLXXPPXXEGSPSXXXGWGPX 1003
P + P PG P R S PPPPP P P G
Sbjct: 882 PVRSPFPGASS-AQPAAMSRTSSVSTLPPPPP----TASMTASAPAIASPPPPKVGETYH 936
Query: 1004 PPXRXGXXHPP 1036
PP G PP
Sbjct: 937 PPTASGTRVPP 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,405
Number of Sequences: 5004
Number of extensions: 29745
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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