Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L14
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    28   1.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.3  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   3.3  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   4.4  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.6  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 149 LYNKTNRYFKTRLLTVIEFKMCYLNIIFLTCALLVTSIAQNSSKDAIGFPEMEENPDLRN 328
           +Y+ TN   +TR +    FK C   I+F+        +   + ++AI   E   N DL  
Sbjct: 140 IYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVSEEFRNWDLEM 199

Query: 329 KE 334
            E
Sbjct: 200 AE 201


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 615  LXNHLYPISSSLGVNSTTLVVSCVTLSLETRFT 713
            + N   PI+SS  VNS+T + S  TL+  T  T
Sbjct: 3137 ILNSSTPITSSTVVNSSTPITSSTTLNTSTPIT 3169



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 633  PISSSLGVNSTTLVVSCVTLSLETRFT 713
            PI+SS  VNS+T + S  TL+  T  T
Sbjct: 3287 PITSSTVVNSSTPITSSTTLNTSTPIT 3313


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 423 QSQIQSSFWSPG*NNSLSGHLAGMNTGWRFSLFLKSGFSSISGNPI 286
           Q + + S WS   +    GH   +NT   F L L   F+ +  N I
Sbjct: 451 QEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTLYQSFTEVDENSI 496


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 396 SPG*NNSLSGHLAGMNTGWRFSL-FLKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 220
           SP   NS+     G N  W   L +L   +  +SG+ +A+F L   I  T  AHV  I+F
Sbjct: 416 SPIVGNSMVTVANGHN--WMCILNYLTDSYPLLSGSAVAAFTLPSFIGATVFAHVSQIMF 473


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 333 SLFLKSGFSSISGNPIASFELFCAID 256
           + F++SG S++ GN + ++EL   ID
Sbjct: 128 NFFVESGESTLEGNNVINYELAAGID 153


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 505 ILSDFTWSLSKSWPAFVCSWVI*VRWSAITNPVVFLVSRI 386
           I+S   W  S+  P +  +W++ +  +    P+++LV+R+
Sbjct: 469 IISPQLWQ-SRDAPRYYPAWIVQIVVAWFVTPIIYLVARV 507


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +2

Query: 245 LLVTSIAQNSSKDAIGFPEMEENPDLRNKENRQPVFIPARCPDNELFYPGDQKDDWICDC 424
           +  TS   NS   +I  PE ++  +L+NK    P     +   N+   P D     I   
Sbjct: 149 MFTTSRRNNSISGSITIPESDQQINLQNKFLSTP---SIKNNANKSLSPQDSIS--IFGT 203

Query: 425 RPANLYHPGTDK--CW 466
            P N Y   TD   CW
Sbjct: 204 SPFNAYQQNTDNFVCW 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,203
Number of Sequences: 5004
Number of extensions: 72511
Number of successful extensions: 248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)