Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L14
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    29   5.4  
AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    29   5.4  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    29   5.4  

>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
            C05D12.2 protein.
          Length = 1052

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/58 (39%), Positives = 25/58 (43%)
 Frame = +2

Query: 365  CPDNELFYPGDQKDDWICDCRPANLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPV 538
            CP     Y GD   D IC   P   Y  G   C P F    CE+   LVLP+N  I V
Sbjct: 971  CPSR---YTGDYCWDRIC--HPPATYSFGICSCPPGFYGDFCEI--MLVLPKNGSILV 1021


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 324 LKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 220
           +  G+  +S N   + ++FC+I  +  +H+ NI+F
Sbjct: 37  ISHGYFDVSKNTQITSDIFCSISFSFTSHLSNILF 71


>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 149 TKMLNNNYSDRQEIKIMLSDYIYKTSTYIGSLWTTQILRIPY 24
           T  LNN Y+D   + ++   YI     Y+   +++Q+ R+ Y
Sbjct: 422 TAQLNNRYTDASLMGVITDIYILSKVNYLVCTFSSQVCRMGY 463


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 149 TKMLNNNYSDRQEIKIMLSDYIYKTSTYIGSLWTTQILRIPY 24
           T  LNN Y+D   + ++   YI     Y+   +++Q+ R+ Y
Sbjct: 422 TAQLNNRYTDASLMGVITDIYILSKVNYLVCTFSSQVCRMGY 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,555
Number of Sequences: 27780
Number of extensions: 411942
Number of successful extensions: 1165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)