Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L11
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   2.7  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   3.6  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    27   4.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   4.8  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    26   6.3  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +1

Query: 358  LWRIPIFLWATISLFMSMNY--FWGPTKLFFVYMTHWGLLFIVLESMFGIIVVLRKRGRP 531
            LW   ++LW T+S  +  NY     P    +V    W + F++L      + +L  +G P
Sbjct: 1080 LWLSFLWLWGTLSSRLDYNYKVLLQPINSVYVVAGVWPVSFVLLS-----VCILLYKGLP 1134

Query: 532  DATFGLPWYVKTY-WVLYNISIPVAFLITVFYWGILKSSL 648
                  P  +  +   L +  + + FLI+V       S+L
Sbjct: 1135 PFYRQKPGSIPAFSKSLLHRKVVICFLISVINQNFWMSTL 1174


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -3

Query: 588 NIVENPVRFYIPRQAKCSIWSSAFP*YYDDTEHRFQDDE*QTPMCH 451
           N   NPV FYIP     S   S+F    +D E +  D E QT + H
Sbjct: 248 NARNNPVDFYIP----SSFEESSFQTIPEDFEPQVHDHENQTQLNH 289


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 550 PWYVKTYWVLYNISIPVAFLITVFYWGILKSSLDTVKFSPNPVLDVMI 693
           P   + ++VL N     A+  T++YW    SS+    F+  PVL+ ++
Sbjct: 135 PASAEKHFVLGNEKSARAYGETMYYWFTSDSSISPDTFAGRPVLNYLL 182


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 391 WLPTRILVSSITKGKCFPSW 332
           WL   ILVS + + K FP W
Sbjct: 622 WLDLNILVSLLNRAKEFPKW 641


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = +1

Query: 265 HGLYCISAFLGSEDESVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFF 444
           +G+Y  SA  G     V+IF +  LG+I PL            SLF  +NY WG T L F
Sbjct: 411 YGIYSASASAG-----VKIF-QLLLGAIFPLFAE---------SLFRRLNYGWGCTLLAF 455

Query: 445 VYM 453
           + +
Sbjct: 456 ILL 458


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = +1

Query: 265 HGLYCISAFLGSEDESVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFF 444
           +G+Y  SA  G     V+IF +  LG+I PL            SLF  +NY WG T L F
Sbjct: 411 YGIYSASASAG-----VKIF-QLLLGAIFPLFAE---------SLFRRLNYGWGCTLLAF 455

Query: 445 VYM 453
           + +
Sbjct: 456 ILL 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,403
Number of Sequences: 5004
Number of extensions: 76810
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)