Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L11
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 36 0.044
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677... 33 0.31
03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262 31 0.94
11_01_0032 - 249808-250788 31 1.6
12_01_0031 - 264610-265986 29 5.0
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 29 6.6
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763... 29 6.6
07_01_1101 + 10122804-10123758,10123872-10123910,10124072-101242... 28 8.8
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 35.9 bits (79), Expect = 0.044
Identities = 18/90 (20%), Positives = 41/90 (45%)
Frame = +1
Query: 574 VLYNISIPVAFLITVFYWGILKSSLDTVKFSPNPVLDVMIHGVNSVVMFVELMFSAHPSR 753
++Y S L + +WG+L KF + + D M H +N+V++ ++ + P
Sbjct: 253 IIYQTSAGATMLTDITFWGLLVPFFYRDKFGLSLITDGM-HSLNAVLLLIDTFLNNMPFP 311
Query: 754 LLHIMQPLYFAGAYMLFSVTYYXAGGXNPW 843
+ ++++ +Y+ F + G + W
Sbjct: 312 WYRLAFFVFWSCSYVTFQWVLHACGAISWW 341
>10_02_0202 -
6770448-6770561,6771185-6771279,6771638-6771686,
6771795-6771843,6772035-6772228
Length = 166
Score = 33.1 bits (72), Expect = 0.31
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +1
Query: 409 MNYFWGPTKLFFVYMTHWGLLFIVLESMFGIIVVLRKRGRPDATFGLP-WYVKTYWVLYN 585
+NY GP LFF Y T L+ + FG IV+ G P G+ W TYW L
Sbjct: 26 LNYL-GPAYLFFYYCTQCFLIGGAFLNAFGAIVL----GAP---IGIKYWAATTYWSLLM 77
Query: 586 ISIPVAFLITVFYWGILKSSLDTVKFSP 669
V ++ + I +++D + +P
Sbjct: 78 SLFTVVLNVSAIWTAIFGAAMDYMISAP 105
>03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262
Length = 319
Score = 31.5 bits (68), Expect = 0.94
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 331 SSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFFVYMTHWGLL 471
S LG +S L W I + LW T S + WG LF HWG++
Sbjct: 157 SLLGRMSFLAWMIFVPLWLTFSYTVGAFSLWGGGFLF-----HWGVI 198
>11_01_0032 - 249808-250788
Length = 326
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/89 (28%), Positives = 37/89 (41%)
Frame = +1
Query: 310 SVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFFVYMTHWGLLFIVLES 489
+V + + LG +S W + LW T+S + WG LF HWG V++
Sbjct: 136 TVGLVAGAVLGRMSVKAWMAFVPLWTTLSYTVGAYSIWGGGFLF-----HWG----VMDY 186
Query: 490 MFGIIVVLRKRGRPDATFGLPWYVKTYWV 576
G +V+L G+ Y YWV
Sbjct: 187 SGGYVVLL--------AAGVSGYTAAYWV 207
>12_01_0031 - 264610-265986
Length = 458
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 310 SVEIFTKSSLGSISPLLWRIPIFLWATISLFMSMNYFWGPTKLFFVYMTHWGLL 471
+V + + LG +S W + LW T+S + WG LF HWG++
Sbjct: 136 TVGLVAGAVLGRMSVKAWMAFVPLWTTLSYTVGAYSIWGGGFLF-----HWGVM 184
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 892 SFDWXDQXITG*MXCSPRDXIHQRNNK 812
SF W D+ T CS D +H+ N+K
Sbjct: 503 SFTWRDRVTTAASICSALDYLHRNNHK 529
>08_02_0871 -
22075553-22075731,22075815-22076028,22076309-22076351,
22076557-22076616,22077522-22077593,22078163-22078368,
22078782-22078837,22079540-22079777,22079908-22080081,
22080157-22080292,22080822-22080853,22081563-22081619,
22081713-22081965,22082057-22082145,22082590-22082643,
22084016-22084207,22085338-22085499
Length = 738
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 278 ASRHFWDRKMNPSRSLRNPAWEAFPLCYGGYQYSC 382
A+ HF ++ RS + AW+AF L Y ++ C
Sbjct: 152 AASHFRHSLLSVVRSSCSHAWDAFQLAYASFEQYC 186
>07_01_1101 +
10122804-10123758,10123872-10123910,10124072-10124251,
10124841-10124951,10125448-10125560
Length = 465
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 428 GPQK*FIDMKSEMVAHKNIGILHNKGEMLPKLDFVKISTDSSSDPRNAEMQYN 270
GP+K ++ MK+ A + L NKG M VKI DS ++ N + + N
Sbjct: 360 GPRKGYLVMKTYKKAQEYYRELRNKGAMASGAG-VKIEDDSETESDNEDEKAN 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,162,679
Number of Sequences: 37544
Number of extensions: 494210
Number of successful extensions: 1035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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