Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L11
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   5.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   5.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 351 GNASQAGFRKDLDGFIFRSQKCR-DAVQSV 265
           GNA      KD+DGF+      + D VQ V
Sbjct: 214 GNAKDLAKEKDIDGFLVGGASLKPDFVQIV 243


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 436 LFFVYMTHWGLLFIVLESMFGIIVVLRKRGR 528
           LF + M +W  L +++ +   I++ +R+R +
Sbjct: 206 LFGMIMMYWFPLVVIIYTYTSILLEIRRRSK 236


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 268 GLYCISAFLGSEDESVEIFTKSSLGSISPLLW 363
           GL+ +   L + D SV I +K  L + + L W
Sbjct: 11  GLFGVLLLLTNADNSVHILSKYQLITSTTLNW 42


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 345  HFPFVMEDTNILVGNHLTFHVDELFLGAHEAILCVYDTLGSVIHRPGIYVRYHRSTKE-- 518
            H+P   ED N+LV N        +   A+  +L V  T+ +V+ R  I   ++ S     
Sbjct: 797  HYP-TRED-NLLVCNSYV-DASYMIAFAYPIMLIVVCTVYAVLTRK-IPEAFNESKHIGF 852

Query: 519  TRKTRCYIWLALV 557
            T  T C IWLA V
Sbjct: 853  TMYTTCVIWLAFV 865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,024
Number of Sequences: 438
Number of extensions: 5671
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)