Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L07
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.7  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 539 PKKKXPXPXGGGXFXXXKXPPPPPPXXEKK 450
           P    P P   G     + PPPPPP   KK
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 468 GGGGGXFXXXKXPPPPGXXGF 530
           GGG G F      PPPG  GF
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF 207


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 732 RAPPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKNP 845
           +A PPP    +  PP      PP + ++T  +PP + P
Sbjct: 203 KAQPPPPPPQQNYPPAASSSAPPMQYQQT-AYPPQQAP 239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 503 PPPPXXXGXFFXGPXPXPP 559
           PPPP   G    GP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = +3

Query: 735  APPPPKXFXKIXP-PXKRXGNPPXEXKKTPGFPPXKNPXWXPXXXSP 872
            APP PK      P P    G PP   K   G PP   P   P    P
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKP 1203



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 735  APPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKNPXWXPXXXSP 872
            APP PK    + P     G PP   K +   PP   P   P    P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPV-PKPSVAAPPVPVPSGAPPVPKP 1145



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +3

Query: 738  PPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKNPXWXPXXXSP 872
            PP PK    + PP       P   K + G PP   P   P   +P
Sbjct: 1179 PPVPKPAAGV-PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,762
Number of Sequences: 5004
Number of extensions: 17385
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)