Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L07
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.28
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 31 1.1
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 31 1.1
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 31 1.1
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 31 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.5
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 4.6
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.1
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 29 6.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 8.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +3
Query: 738 PPPPKXFXKIX-----PPXKRXGNPPXEXKKTPGFPPXKNPXWXPXXXSPP 875
PPPPK + PP G+PP +P PP +P P SPP
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 290
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 681 PXKGPXPXXAXXXGFXXRAPPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKNPXWXPX 860
P P P + PPPP PP R G+PP +P PP P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGS---PPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 293
Query: 861 XXSPP 875
SPP
Sbjct: 294 AGSPP 298
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 734 GPPPP*XIXKNXPPX*KXGQPPXGXKKNPRVSPXEKPXLAPXXXXPPR 877
G PPP PP G PP G P+ P PPR
Sbjct: 287 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +3
Query: 738 PPPPKXFXKIX-----PPXKRXGNPPXEXKKTPGFPPXKNPXWXPXXXSPP 875
PPPPK + PP G+PP +P PP +P P SPP
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 311
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 681 PXKGPXPXXAXXXGFXXRAPPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKNPXWXPX 860
P P P + PPPP PP R G+PP +P PP P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGS---PPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 314
Query: 861 XXSPP 875
SPP
Sbjct: 315 AGSPP 319
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 734 GPPPP*XIXKNXPPX*KXGQPPXGXKKNPRVSPXEKPXLAPXXXXPPR 877
G PPP PP G PP G P+ P PPR
Sbjct: 308 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +3
Query: 738 PPPPKXFXKIX-----PPXKRXGNPPXEXKKTPGFPPXKNPXWXPXXXSPP 875
PPPPK + PP G+PP +P PP +P P SPP
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 296
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 681 PXKGPXPXXAXXXGFXXRAPPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKNPXWXPX 860
P P P + PPPP PP R G+PP +P PP P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGS---PPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 299
Query: 861 XXSPP 875
SPP
Sbjct: 300 AGSPP 304
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 734 GPPPP*XIXKNXPPX*KXGQPPXGXKKNPRVSPXEKPXLAPXXXXPPR 877
G PPP PP G PP G P+ P PPR
Sbjct: 293 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Frame = +3
Query: 681 PXKGPXPXXAXXXGFXXRAPPPPK----XFXKIXPPXKRXGNPPXEXKKTPGFPP---XK 839
P P P + G PPPP+ + PP + PP ++ P PP +
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181
Query: 840 NPXWXPXXXSPP 875
NP P PP
Sbjct: 182 NPPRTPPSPIPP 193
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 449 FFFPXXGGGGGXFXXXKXPPPP 514
F FP GGGGG PPPP
Sbjct: 17 FLFPSAGGGGGGCGCGAPPPPP 38
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 517 GXGXFFXGXXXLXPPKXPXPPXLGGGXGFXPPPXG 621
G G + L PP P P +GGG G+ P G
Sbjct: 51 GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 517 GXGXFFXGXXXLXPPKXPXPPXLGGGXGFXPPPXG 621
G G + L PP P P +GGG G+ P G
Sbjct: 51 GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +2
Query: 449 FFFPXXGGGGGXFXXXKX-----PPPPXXXGXFFXGPXPXPP 559
F FP GGGGG PPPP G P P PP
Sbjct: 18 FLFPMAGGGGGGGGCAPAAPACAPPPPPMCGCAPPPPPPPPP 59
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/84 (28%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPPQKXPGPRXWXXXXXFXPPXGGXXXXPKXXGXPXKKNXXXRA 682
PPPP G + P P PP + PGP PP P G P R
Sbjct: 287 PPPPPSSG-MWPPPPPPPPGRTPGPPGMPGMP--PPPPPSRFGPPGMGGMPPPPPPGMRY 343
Query: 683 XKGAKXXXGXXLXVFXKG--PPPP 748
G G PPPP
Sbjct: 344 PGGMPPPPPPRYPSAGPGMYPPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/84 (28%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPPQKXPGPRXWXXXXXFXPPXGGXXXXPKXXGXPXKKNXXXRA 682
PPPP G + P P PP + PGP PP P G P R
Sbjct: 297 PPPPPSSG-MWPPPPPPPPGRTPGPPGMPGMP--PPPPPSRFGPPGMGGMPPPPPPGMRY 353
Query: 683 XKGAKXXXGXXLXVFXKG--PPPP 748
G G PPPP
Sbjct: 354 PGGMPPPPPPRYPSAGPGMYPPPP 377
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +3
Query: 675 KGPXKGPXPXXAXXXGFXXRAPPPPKXFXKIXPPXKRXGNPPXEXKKTPGFPPXKN 842
+GP G P PPPP+ P G PP P PP N
Sbjct: 1552 RGPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPN 1607
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPP 559
PPPP G F GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 505 PPPXGXGXFFXGXXXLXPPKXPXPPXLGGGXGFXPPPXG 621
PPP G G PP PP GG PPP G
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPP 559
PPPP G F GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 505 PPPXGXGXFFXGXXXLXPPKXPXPPXLGGGXGFXPPPXG 621
PPP G G PP PP GG PPP G
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPP 559
PPPP G F GP P PP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 505 PPPXGXGXFFXGXXXLXPPKXPXPPXLGGGXGFXPPPXG 621
PPP G G PP PP GG PPP G
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +2
Query: 458 PXXGGGGGXFXXXK--XPPPPXXXGXFFXGPXPXP-PQKXPGP 577
P GGGGG + + PPPP P P P PQ P P
Sbjct: 80 PYGGGGGGGYGRPQGYVPPPPPPPTQPEPEPEPRPEPQPEPQP 122
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 556 PPKXPXPPXLGGGXGFXPPPXG 621
PP P PP LGG PPP G
Sbjct: 577 PPPPPPPPMLGGPPPPPPPPGG 598
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.6
Identities = 40/145 (27%), Positives = 41/145 (28%), Gaps = 17/145 (11%)
Frame = +2
Query: 458 PXXGGGGGXFXXXKXPPPPXXXGXFFXGPXPXPP-QK----XPGPRXWXXXXXFXPPXG- 619
P G G P PP G GP P PP QK PGP P G
Sbjct: 119 PGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLPGPQGD 178
Query: 620 ----GXXXXPKXXGXPXKKNXXXR----AXKGAKXXXGXXLXVFXKGPP-PP*XIXKNXP 772
G P G P KG G + GPP PP P
Sbjct: 179 AGTSGQDGVPGLPGPPGPSGPQGAPGVPGEKGPTGEPGKVINGAPPGPPGPPGPPGPQGP 238
Query: 773 --PX*KXGQPPXGXKKNPRVSPXEK 841
P K GQP P EK
Sbjct: 239 PGPPGKDGQPGKAGPPGLPGDPGEK 263
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 732 RAPPPPKXFXKIXPPXKRXGNPPXEXKKTPGFP 830
+ PPPPK K+ PP PP + TP P
Sbjct: 27 KKPPPPKSASKMGPPPPAPA-PPTAPEATPAAP 58
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +1
Query: 505 PPPXGXGXFFXGXXXLXPPKXPXPPXLGGGXGFXPPP 615
P P G F+ PP P PP GG G PP
Sbjct: 222 PGPTGPKNFYITSGPPGPPGPPGPPGNPGGIGPRGPP 258
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPPQKXPGP 577
PPPP G + P P PP GP
Sbjct: 42 PPPPPCGGGYEAPPPPPPPSYAGGP 66
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 681 PXKGPXPXXAXXXGFXXRAPPPPKXFXKIXPPXKRXGNPP 800
P GP F PPPP I PP G PP
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP 115
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 503 PPPPXXXGXFFXGPXPXPPQ 562
PPPP G F GP PPQ
Sbjct: 25 PPPPNDSGHEFIGPSSGPPQ 44
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 470 GGGGXFXXXKXPPPPXXXGXFFXGPXPXPP 559
G GG PPP G F P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 470 GGGGXFXXXKXPPPPXXXGXFFXGPXPXPP 559
G GG PPP G F P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 723 FXXRAPPPPKX-FXKIXPPXKRXGNPPXEXKKTPGFPPXKNP 845
F APPPP PP G PP + GF P K P
Sbjct: 702 FNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPP 743
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,129,572
Number of Sequences: 27780
Number of extensions: 213619
Number of successful extensions: 2087
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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