Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L03
(941 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding prote... 36 0.16
BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein. 36 0.16
BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding prote... 36 0.16
AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding prot... 36 0.16
AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein N... 36 0.16
AL834396-1|CAD39058.1| 1009|Homo sapiens hypothetical protein pr... 33 2.0
AB067489-1|BAB67795.1| 1112|Homo sapiens KIAA1902 protein protein. 33 2.0
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 32 2.6
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 32 2.6
BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein. 32 2.6
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 32 2.6
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein. 32 2.6
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 6.1
>BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 36.3 bits (80), Expect = 0.16
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKX-KXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
GP P PP P P+ G P P P PP PPP P P
Sbjct: 433 GPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
Query: 867 XXXXPXXP 890
P P
Sbjct: 493 PPAPPGIP 500
>BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.16
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKX-KXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
GP P PP P P+ G P P P PP PPP P P
Sbjct: 192 GPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 251
Query: 867 XXXXPXXP 890
P P
Sbjct: 252 PPAPPGIP 259
>BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 36.3 bits (80), Expect = 0.16
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKX-KXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
GP P PP P P+ G P P P PP PPP P P
Sbjct: 433 GPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
Query: 867 XXXXPXXP 890
P P
Sbjct: 493 PPAPPGIP 500
>AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding protein
SNP70 protein.
Length = 641
Score = 36.3 bits (80), Expect = 0.16
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKX-KXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
GP P PP P P+ G P P P PP PPP P P
Sbjct: 433 GPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
Query: 867 XXXXPXXP 890
P P
Sbjct: 493 PPAPPGIP 500
>AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein
NpwBP protein.
Length = 641
Score = 36.3 bits (80), Expect = 0.16
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKX-KXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
GP P PP P P+ G P P P PP PPP P P
Sbjct: 433 GPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
Query: 867 XXXXPXXP 890
P P
Sbjct: 493 PPAPPGIP 500
>AL834396-1|CAD39058.1| 1009|Homo sapiens hypothetical protein
protein.
Length = 1009
Score = 32.7 bits (71), Expect = 2.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 750 PXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXXXXPXXP 890
P P TP P P PP PPP P P P P
Sbjct: 446 PPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLP 492
Score = 32.3 bits (70), Expect = 2.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +3
Query: 711 PXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
P PPL P TP P P PP PPP P P
Sbjct: 443 PPPPPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLPGP 494
>AB067489-1|BAB67795.1| 1112|Homo sapiens KIAA1902 protein protein.
Length = 1112
Score = 32.7 bits (71), Expect = 2.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 750 PXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXXXXPXXP 890
P P TP P P PP PPP P P P P
Sbjct: 549 PPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLP 595
Score = 32.3 bits (70), Expect = 2.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +3
Query: 711 PXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
P PPL P TP P P PP PPP P P
Sbjct: 546 PPPPPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPPLPGP 597
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 32.3 bits (70), Expect = 2.6
Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Frame = +1
Query: 517 GXGAXXGXXGPGXPXPGXXXPXNXXXXPKGGTRXPXXXGXXPXKXGNXRPXNAXXXK--K 690
G G GPG P P P G P G P P + +
Sbjct: 213 GGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDR 272
Query: 691 APXXXVXPXXP---PPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
P + P P PPL P P P PP P PP P
Sbjct: 273 PPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
Score = 31.1 bits (67), Expect = 6.1
Identities = 26/103 (25%), Positives = 26/103 (25%), Gaps = 2/103 (1%)
Frame = +1
Query: 547 PGXPXPGXXXPXNXXXXPKGGTRXPXXXGXXPXKXGNXR--PXNAXXXKKAPXXXVXPXX 720
PG P PG P P G R P G P P P
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP 309
Query: 721 PPPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
PPP P P P PP P PP P
Sbjct: 310 PPPQQGPPPPPGPFPPRP-PGPLGPPLTLAPPPHLPGPPPGAP 351
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 32.3 bits (70), Expect = 2.6
Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Frame = +1
Query: 517 GXGAXXGXXGPGXPXPGXXXPXNXXXXPKGGTRXPXXXGXXPXKXGNXRPXNAXXXK--K 690
G G GPG P P P G P G P P + +
Sbjct: 213 GGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDR 272
Query: 691 APXXXVXPXXP---PPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
P + P P PPL P P P PP P PP P
Sbjct: 273 PPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
Score = 31.1 bits (67), Expect = 6.1
Identities = 26/103 (25%), Positives = 26/103 (25%), Gaps = 2/103 (1%)
Frame = +1
Query: 547 PGXPXPGXXXPXNXXXXPKGGTRXPXXXGXXPXKXGNXR--PXNAXXXKKAPXXXVXPXX 720
PG P PG P P G R P G P P P
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP 309
Query: 721 PPPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
PPP P P P PP P PP P
Sbjct: 310 PPPQQGPPPPPGPFPPRP-PGPLGPPLTLAPPPHLPGPPPGAP 351
>BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein.
Length = 600
Score = 32.3 bits (70), Expect = 2.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +1
Query: 712 PXXPPPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXPXXXXXRXXXPP 882
P PPP P P +P P PP PPL P PP
Sbjct: 94 PPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP 150
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 32.3 bits (70), Expect = 2.6
Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Frame = +1
Query: 517 GXGAXXGXXGPGXPXPGXXXPXNXXXXPKGGTRXPXXXGXXPXKXGNXRPXNAXXXK--K 690
G G GPG P P P G P G P P + +
Sbjct: 213 GGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDR 272
Query: 691 APXXXVXPXXP---PPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
P + P P PPL P P P PP P PP P
Sbjct: 273 PPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
Score = 31.1 bits (67), Expect = 6.1
Identities = 26/103 (25%), Positives = 26/103 (25%), Gaps = 2/103 (1%)
Frame = +1
Query: 547 PGXPXPGXXXPXNXXXXPKGGTRXPXXXGXXPXKXGNXR--PXNAXXXKKAPXXXVXPXX 720
PG P PG P P G R P G P P P
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP 309
Query: 721 PPPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
PPP P P P PP P PP P
Sbjct: 310 PPPQQGPPPPPGPFPPRP-PGPLGPPLTLAPPPHLPGPPPGAP 351
>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
Length = 1217
Score = 32.3 bits (70), Expect = 2.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +1
Query: 712 PXXPPPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXPXXXXXRXXXPP 882
P PPP P P +P P PP PPL P PP
Sbjct: 639 PPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP 695
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.1 bits (67), Expect = 6.1
Identities = 26/103 (25%), Positives = 26/103 (25%), Gaps = 2/103 (1%)
Frame = +1
Query: 547 PGXPXPGXXXPXNXXXXPKGGTR--XPXXXGXXPXKXGNXRPXNAXXXKKAPXXXVXPXX 720
PG P PG P P G R P P P P P
Sbjct: 287 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP 346
Query: 721 PPPLXXXXXXPXPXXXXAKPXXXXXXXXXXPPXXXPPXPPLXP 849
PPP P P P PP P PP P
Sbjct: 347 PPPQQGPPPPPGP-FPPRPPGPLGPPLTLAPPPHLPGPPPGAP 388
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,276,853
Number of Sequences: 237096
Number of extensions: 973039
Number of successful extensions: 6096
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4035
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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