Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_L03
(941 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.13
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.13
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.13
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.6
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +3
Query: 693 PXXXXXPXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXX 872
P P SPPL P P G P P P PP PP P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 873 XXPXXPXXKXXXPXXXXP 926
P P + P P
Sbjct: 296 SPPPPPPPRGSPPTGSLP 313
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +3
Query: 711 PXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXXXXPXXP 890
P SPP P G P P P PPP P P P P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +3
Query: 693 PXXXXXPXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXX 872
P P SPPL P P G P P P PP PP P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 873 XXPXXPXXKXXXPXXXXP 926
P P + P P
Sbjct: 317 SPPPPPPPRGSPPTGSLP 334
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +3
Query: 711 PXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXXXXPXXP 890
P SPP P G P P P PPP P P P P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +3
Query: 693 PXXXXXPXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXX 872
P P SPPL P P G P P P PP PP P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAA-GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 873 XXPXXPXXKXXXPXXXXP 926
P P + P P
Sbjct: 302 SPPPPPPPRGSPPTGSLP 319
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +3
Query: 711 PXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXXXXPXXP 890
P SPP P G P P P PPP P P P P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +3
Query: 723 PPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPXXXXPXXP 890
PP P P+ P P P PP P P P P P P
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPX 869
GP P PP+ P P G P P P P PPP P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 870 XXXPXXP 890
P P
Sbjct: 783 GPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPX 869
GP P PP+ P P G P P P P PPP P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 870 XXXPXXP 890
P P
Sbjct: 783 GPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +3
Query: 690 GPXXXXXPXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXPX 869
GP P PP+ P P G P P P P PPP P
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
Query: 870 XXXPXXP 890
P P
Sbjct: 366 GPPPPPP 372
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +3
Query: 711 PXXSPPLXXXXXXPXPKXKXGXTPXXXXXXPXXXPXXXPPXPPPXXXPXXXP 866
P PP P P P P P PP PPP P P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,695,436
Number of Sequences: 27780
Number of extensions: 121759
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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