Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_L02
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       31   1.2  
02_05_1245 + 35223504-35224778                                         30   2.7  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/79 (32%), Positives = 27/79 (34%)
 Frame = +1

Query: 595 PTGLXXIPXVXPXKPPPCALLFPTLPXXXIPVRLSPFGKRWXFPIXXPVGIPIXVXXRXP 774
           P  L  IP + P  PPP A  FP  P    P    PF      PI  P   P       P
Sbjct: 241 PFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPH--LPPIFSPPSPPPPPPPAFP 298

Query: 775 QTXAWXPNPPXXPXXLPLF 831
                 P  P  P  LP F
Sbjct: 299 FPFPQLPPLPHFP-PLPSF 316


>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -2

Query: 388 PNDRAQRVSERGSGRAPNTQTASPRALAXSL--MQKNLPHLPLNLK-HKMNA 242
           P   A + S   S  AP+T TA+  + A SL  ++ +LP LPL L  H++ A
Sbjct: 61  PRATATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAA 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,642,020
Number of Sequences: 37544
Number of extensions: 372712
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)