Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K22
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.74 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +2

Query: 461 PGPQXPGXPEXXPPPGXSXXXXXXXRKPPPPPGXXXGXXFGPXP 592
           P P   G P   PPPG +         PPP         + P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 573 PFLAPPPHXXGQXXXXPPPP*GGLXQRXPPP 665
           P   PPP         PPPP G      PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 452  PQXPGPQXPGXPEXXPPPGXSXXXXXXXRKPPPPP 556
            PQ   P  P  P   PPP  +          PPPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 476 PGXPEXXPPPGXSXXXXXXXRKPPPPPG 559
           PG P   PPP            PPPPPG
Sbjct: 6   PGNPPPPPPP--PGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,771
Number of Sequences: 5004
Number of extensions: 21057
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)