Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K20
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   3.4  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    27   4.5  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +2

Query: 509 KTVNSHLARLYNPSKEPALIFYRHGVALLYSGEA-----DENEIYGFFEKNQTPAVKELT 673
           +T +  + +  N ++ P L+  RHGVA  YS  +     +  ++  +    + P V ELT
Sbjct: 270 RTDDEKVIKTLNVTRLPHLVAIRHGVAFSYSERSVSAMRNTFQLIKWASLLKYPLVPELT 329

Query: 674 DKIFEHL 694
             + E+L
Sbjct: 330 PAVVENL 336


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 611 DENEIYGFFEKNQTPAVKELTDKIFEHLTQAATG 712
           DE+EIY +FE   T   K +T+++ E L   A+G
Sbjct: 103 DEHEIYAYFETPTTE--KAVTEQLAEKLCVDASG 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,177
Number of Sequences: 5004
Number of extensions: 48905
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)