Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_K20
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   4.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 602 GEADENEIYGFFEKNQTPAVKELTDKIFEHLTQAATGATQEIGCHVYG 745
           G+ + NE Y  F K  + +V  L   +  +   A  G   EI C V G
Sbjct: 289 GKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEIKCDVTG 336


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +2

Query: 641 KNQTP-AVKELTDKIF--EHLTQAATGATQEIGCHVYGAAC 754
           KNQ P    + T ++    H  Q + G T  + CH    AC
Sbjct: 330 KNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +2

Query: 641 KNQTP-AVKELTDKIF--EHLTQAATGATQEIGCHVYGAAC 754
           KNQ P    + T ++    H  Q + G T  + CH    AC
Sbjct: 41  KNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 81


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +2

Query: 428 CETCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRH 580
           CE C     +   L    K H N    +  N   A  Y  S +  L  Y H
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,170
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)