Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_K19
(866 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 35 0.44
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 35 0.44
BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein pr... 31 4.1
AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protei... 31 4.1
AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protei... 31 4.1
AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protei... 31 4.1
AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protei... 31 4.1
AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protei... 31 4.1
AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protei... 31 4.1
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 34.7 bits (76), Expect = 0.44
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = -1
Query: 698 ERRTGIX*AAGSEQESARGSXQGETPGIFIVLSGFATSDLSVDFCDARXGGRSLWKTPAT 519
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG S+ +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630
Query: 518 RPFYGSWP 495
P Y S P
Sbjct: 631 TPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 34.7 bits (76), Expect = 0.44
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = -1
Query: 698 ERRTGIX*AAGSEQESARGSXQGETPGIFIVLSGFATSDLSVDFCDARXGGRSLWKTPAT 519
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG S+ +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631
Query: 518 RPFYGSWP 495
P Y S P
Sbjct: 632 TPSYLSVP 639
>BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein
protein.
Length = 603
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 215 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 269
>AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 898 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 952
>AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 898 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 952
>AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protein 1
isoform b protein.
Length = 645
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 257 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 311
>AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protein 1
isoform a protein.
Length = 669
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 281 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 335
>AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protein
protein.
Length = 902
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 514 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 568
>AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protein-1
protein.
Length = 762
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 444 QNQGITQERTCEQKASKRPGTVKRPRCWRFP*APPPXTSITKIDAQVRGGETRQDYK 614
+N+ I + A K G+++ W+FP PP S K +AQ +G +T+ K
Sbjct: 374 KNESIKGDFNLTDPAEKPNGSIQVQLDWKFPYIPP--ESFLKPEAQTKGKDTKDSSK 428
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,087,384
Number of Sequences: 237096
Number of extensions: 2330742
Number of successful extensions: 6036
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6036
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -